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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0551800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATP-dependent helicase, DEAH-box family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.77 (0.0332) R2 : 0.269
β1 : 2.42 (0.233) R2dD : 1.33 R2D : -1.29
β2 : -- (--) R2dC : -- R2C : --
β3 : -7.37 (0.862) R2dE : 3.72 R2E : -4.81
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 76.4 (7.94) R2dD*E : 5.54 R2D*E : -4.43
γ1 : 0.243 (0.0503) R2dN8 : 0.0511 R2N8 : -0.175
σ : 0.439
deviance : 88.74
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.38
memory length : 81
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 17.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.89 0.435 2.74 2.62 0.247 -7.11 0.0114 74.6 0.247 7.74 30.12 85 17.2 17.1
107.28 0.486 2.99 0.335 0.257 0.608 0.0416 -- 0.241 7.87 30.12 85 17.2 17.1
85.71 0.431 2.75 2.58 0.252 -7.22 -- 75.8 0.246 7.69 30.3 83 17.2 17.3
103.72 0.474 3 0.351 0.239 0.871 -- -- 0.219 7.3 30.21 9 17.9 17.6
88.74 0.439 2.77 2.42 -- -7.37 -- 76.4 0.243 -- 30.38 81 17.2 17.3
112.7 0.498 3 0.37 0.212 -- 0.019 -- 0.219 8.59 -- -- -- --
112.7 0.497 3 0.371 0.212 -- -- -- 0.219 8.57 -- -- -- --
106.97 0.482 3 0.344 -- 0.9 -- -- 0.243 -- 30.3 8 17.9 17.5
106.44 0.481 3 -- 0.263 0.985 -- -- 0.207 7.71 30.2 13 17.8 17.9
115.23 0.502 3.01 0.371 -- -- -- -- 0.221 -- -- -- -- --
116.32 0.505 3.01 -- 0.214 -- -- -- 0.178 8.44 -- -- -- --
110 0.488 3.01 -- -- 0.927 -- -- 0.218 -- 30.2 8 17.9 17.4
118.87 0.509 3.01 -- -- -- -- -- 0.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.75 temperature 30 90 > th dose dependent rect. 17 17
5 88.71 temperature 30 90 > th dose independent rect. 17 17
21 94.52 temperature 30 90 > th dose independent rect. 18 15
28 95.32 temperature 30 90 > th dose dependent rect. 9 1
43 95.50 temperature 30 10 > th dose dependent rect. 9 1
104 95.73 temperature 30 90 > th dose independent rect. 8 1
153 97.52 temperature 30 10 > th dose independent sin 10 NA
226 100.97 atmosphere 1000 90 < th dose independent rect. 5 5
229 101.53 atmosphere 1000 90 < th dose independent rect. 7 3
230 101.53 atmosphere 1000 10 < th dose independent rect. 4 7
239 101.93 temperature 25 4320 > th dose independent rect. 23 3
241 101.96 humidity 70 30 < th dose independent rect. 18 1
244 102.00 temperature 30 30 > th dose independent rect. 18 1
246 102.00 temperature 25 4320 < th dose independent rect. 24 2
262 102.03 atmosphere 1000 270 < th dose independent rect. 5 2
322 102.88 temperature 30 90 > th dose dependent rect. 17 2
338 102.92 atmosphere 995 10 > th dose independent sin 8 NA
377 103.05 atmosphere 1000 10 < th dose independent rect. 17 1
385 103.05 atmosphere 1000 10 < th dose dependent rect. 17 1
460 103.35 atmosphere 1000 90 < th dose independent rect. 8 1
497 103.62 radiation 10 90 > th dose dependent rect. 17 1
512 103.63 atmosphere 1000 720 < th dose independent rect. 22 12
549 103.86 radiation 10 90 > th dose independent rect. 17 1
579 103.96 atmosphere 1000 10 < th dose independent rect. 17 18
620 104.13 temperature 25 4320 > th dose dependent rect. 23 2
621 104.13 atmosphere 1000 90 < th dose dependent rect. 5 5
623 104.14 atmosphere 1000 10 < th dose dependent rect. 4 7
655 104.25 atmosphere 1000 720 > th dose independent sin 8 NA
704 104.43 atmosphere 1000 720 < th dose independent sin 8 NA
713 104.45 temperature 25 720 < th dose independent rect. 1 7
892 104.48 atmosphere 995 30 < th dose independent sin 8 NA
964 104.50 atmosphere 995 30 < th dose dependent sin 8 NA