BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0551800 Os09g0551800|Os09g0551800
(1187 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0551800 ATP-dependent helicase, DEAH-box family protein 2321 0.0
Os01g0592900 ATP-dependent helicase, DEAH-box family protein 208 2e-53
>Os09g0551800 ATP-dependent helicase, DEAH-box family protein
Length = 1187
Score = 2321 bits (6015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1122/1187 (94%), Positives = 1122/1187 (94%)
Query: 1 MGAATADEDFATXXXXXXXXXXXVYQVGGVPVEFPYKPYGTQLAFMGRVIATLDRARRQG 60
MGAATADEDFAT VYQVGGVPVEFPYKPYGTQLAFMGRVIATLDRARRQG
Sbjct: 1 MGAATADEDFATPPPPARAPGGRVYQVGGVPVEFPYKPYGTQLAFMGRVIATLDRARRQG 60
Query: 61 RSHALLESPTGTGKSLSLLCSALAWQRHYPLRXXXXXXXXXFLHGGGFVPDDTQKQATPG 120
RSHALLESPTGTGKSLSLLCSALAWQRHYPLR FLHGGGFVPDDTQKQATPG
Sbjct: 61 RSHALLESPTGTGKSLSLLCSALAWQRHYPLRAPPAAAPDPFLHGGGFVPDDTQKQATPG 120
Query: 121 VPEKATRKKNVPTIYYATRTHAQITQVVREYRKTSYRVRMAILASRKHYCVNKNVCMSGN 180
VPEKATRKKNVPTIYYATRTHAQITQVVREYRKTSYRVRMAILASRKHYCVNKNVCMSGN
Sbjct: 121 VPEKATRKKNVPTIYYATRTHAQITQVVREYRKTSYRVRMAILASRKHYCVNKNVCMSGN 180
Query: 181 IDELCKSLLDDSAQGCPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGRKVKGCPYFAA 240
IDELCKSLLDDSAQGCPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGRKVKGCPYFAA
Sbjct: 181 IDELCKSLLDDSAQGCPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGRKVKGCPYFAA 240
Query: 241 QTMAEAAQLVFCPYNYLISPIVRRAMDIDIRGSIIVLDEAHNIEDIARDAGSFDVDEESL 300
QTMAEAAQLVFCPYNYLISPIVRRAMDIDIRGSIIVLDEAHNIEDIARDAGSFDVDEESL
Sbjct: 241 QTMAEAAQLVFCPYNYLISPIVRRAMDIDIRGSIIVLDEAHNIEDIARDAGSFDVDEESL 300
Query: 301 LFLRQELEGLVTDEAVAKIYEPLHEVIQGLNGWIDEQGNNLQKNEFEHPASFWTGEEAMK 360
LFLRQELEGLVTDEAVAKIYEPLHEVIQGLNGWIDEQGNNLQKNEFEHPASFWTGEEAMK
Sbjct: 301 LFLRQELEGLVTDEAVAKIYEPLHEVIQGLNGWIDEQGNNLQKNEFEHPASFWTGEEAMK 360
Query: 361 ELKYAGITPVNFPVLQECATKAIKAASDAESEGVHLSGGSAMTXXXXXXXXXXXXAENGR 420
ELKYAGITPVNFPVLQECATKAIKAASDAESEGVHLSGGSAMT AENGR
Sbjct: 361 ELKYAGITPVNFPVLQECATKAIKAASDAESEGVHLSGGSAMTLESLFSSLSYFFAENGR 420
Query: 421 HSNDYQLALQRFAKREGNSVTSFIGWKCVMSLWCLNPAVVFRDIADLTLSVILTSGTLSP 480
HSNDYQLALQRFAKREGNSVTSFIGWKCVMSLWCLNPAVVFRDIADLTLSVILTSGTLSP
Sbjct: 421 HSNDYQLALQRFAKREGNSVTSFIGWKCVMSLWCLNPAVVFRDIADLTLSVILTSGTLSP 480
Query: 481 MGSFASELGVQFEACMEAPHVINADSQVFATVLSSGPTGRRLNASYRTANEYSFQDELGA 540
MGSFASELGVQFEACMEAPHVINADSQVFATVLSSGPTGRRLNASYRTANEYSFQDELGA
Sbjct: 481 MGSFASELGVQFEACMEAPHVINADSQVFATVLSSGPTGRRLNASYRTANEYSFQDELGA 540
Query: 541 TLEEICRVVPGGALVFFPSYNLLEKLQRRWSQTGQWARLEAQKHVCVEPRGSTEELEPVL 600
TLEEICRVVPGGALVFFPSYNLLEKLQRRWSQTGQWARLEAQKHVCVEPRGSTEELEPVL
Sbjct: 541 TLEEICRVVPGGALVFFPSYNLLEKLQRRWSQTGQWARLEAQKHVCVEPRGSTEELEPVL 600
Query: 601 KGYYNAILXXXXXXXXXXXXXQIVKNRVTKDSSQESAKGGAAFLAVCRGKVSEGIDFSDD 660
KGYYNAIL QIVKNRVTKDSSQESAKGGAAFLAVCRGKVSEGIDFSDD
Sbjct: 601 KGYYNAILGKAPPKKGRGGAKQIVKNRVTKDSSQESAKGGAAFLAVCRGKVSEGIDFSDD 660
Query: 661 KARVVETMDGLTRFFQNAEEQIKIKAQGVSPKDRLDACVLPSQGDKRKLPWPEPNFSNQT 720
KARVVETMDGLTRFFQNAEEQIKIKAQGVSPKDRLDACVLPSQGDKRKLPWPEPNFSNQT
Sbjct: 661 KARVVETMDGLTRFFQNAEEQIKIKAQGVSPKDRLDACVLPSQGDKRKLPWPEPNFSNQT 720
Query: 721 VLQNNKDVKSESHIDGAGVDRMKLSDTXXXXXXXXXXXXGLVKKQISPEPENVPMACQLP 780
VLQNNKDVKSESHIDGAGVDRMKLSDT GLVKKQISPEPENVPMACQLP
Sbjct: 721 VLQNNKDVKSESHIDGAGVDRMKLSDTSSESWHLSSKHSGLVKKQISPEPENVPMACQLP 780
Query: 781 PSYKVQYNLEGEADNGTNYEVNINFIDLEECDTKPRYVKLTIFNPSEHITQQSTVMEETY 840
PSYKVQYNLEGEADNGTNYEVNINFIDLEECDTKPRYVKLTIFNPSEHITQQSTVMEETY
Sbjct: 781 PSYKVQYNLEGEADNGTNYEVNINFIDLEECDTKPRYVKLTIFNPSEHITQQSTVMEETY 840
Query: 841 AEVPIASPSNRNGENASTVMNEGDPVLDLPISLSAANRNISCVSTSAATPERSGSISHLE 900
AEVPIASPSNRNGENASTVMNEGDPVLDLPISLSAANRNISCVSTSAATPERSGSISHLE
Sbjct: 841 AEVPIASPSNRNGENASTVMNEGDPVLDLPISLSAANRNISCVSTSAATPERSGSISHLE 900
Query: 901 HESWTNRSVNSHCQKRRKLSSPMSCCTYTERSCSPSKPYLHGGCDVSMLPGDLRTDGMCC 960
HESWTNRSVNSHCQKRRKLSSPMSCCTYTERSCSPSKPYLHGGCDVSMLPGDLRTDGMCC
Sbjct: 901 HESWTNRSVNSHCQKRRKLSSPMSCCTYTERSCSPSKPYLHGGCDVSMLPGDLRTDGMCC 960
Query: 961 KSMKMSRCENVKVERNSKLAEFPSRESTQEKLFICCARCKTALGLQEDGFLVXXXXXXXX 1020
KSMKMSRCENVKVERNSKLAEFPSRESTQEKLFICCARCKTALGLQEDGFLV
Sbjct: 961 KSMKMSRCENVKVERNSKLAEFPSRESTQEKLFICCARCKTALGLQEDGFLVSCSSSLSS 1020
Query: 1021 KFYLTYLWRHGPSADILPGKDFLASPPLKIKVMVCNVSSVNKMMLGNLSNEGSAHNSSFW 1080
KFYLTYLWRHGPSADILPGKDFLASPPLKIKVMVCNVSSVNKMMLGNLSNEGSAHNSSFW
Sbjct: 1021 KFYLTYLWRHGPSADILPGKDFLASPPLKIKVMVCNVSSVNKMMLGNLSNEGSAHNSSFW 1080
Query: 1081 SEKDGCVYKPVTCQTCSCKNACVTTLGAQVVATDSSNQQFCDKVILFDDLLHVKHGPSKD 1140
SEKDGCVYKPVTCQTCSCKNACVTTLGAQVVATDSSNQQFCDKVILFDDLLHVKHGPSKD
Sbjct: 1081 SEKDGCVYKPVTCQTCSCKNACVTTLGAQVVATDSSNQQFCDKVILFDDLLHVKHGPSKD 1140
Query: 1141 QALSAPIGTVKPISPPPVIDLESFAYKPLKKDPVPVNTRRSKNEWLL 1187
QALSAPIGTVKPISPPPVIDLESFAYKPLKKDPVPVNTRRSKNEWLL
Sbjct: 1141 QALSAPIGTVKPISPPPVIDLESFAYKPLKKDPVPVNTRRSKNEWLL 1187
>Os01g0592900 ATP-dependent helicase, DEAH-box family protein
Length = 876
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 156/538 (28%), Positives = 251/538 (46%), Gaps = 72/538 (13%)
Query: 160 MAILASRKHYCVNKNVC------MSGNIDELCKSLLDDSAQGCPEYKNAQKLSRHPSLQI 213
MA+L SR+ C+++ V + LCK + C + + + R+ S ++
Sbjct: 1 MAVLGSREQMCIHEEVSKLRGRQQNNACHYLCKK------RWCRHHNSVAEFMRNNS-EL 53
Query: 214 GGCYEVHDIEDLVRVGRKVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMD-IDIRG 272
G E DIEDLV +GR CPY+ ++ ++++ ++F PYNYLI P RR+++ I
Sbjct: 54 GS--EACDIEDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDN 111
Query: 273 SIIVLDEAHNIEDIARDAGSFDV---DEESLLFLRQELEGLVT-----DEAVAKIYEP-- 322
++++ DEAHN+E I DA SFD+ + S + QE L + + + K ++P
Sbjct: 112 AVLIFDEAHNLESICADAASFDLLPNNLSSCIAEAQECIQLCSAKRTFENSADKQFDPEN 171
Query: 323 ---LHEVIQGLNGWIDEQGNNLQKNEFEHPASFWTGEEAMKELKYAGITPVNFPVLQECA 379
L ++ L I E + ++ P ++ E + EL T + A
Sbjct: 172 YAILKALLMALEKKISEVVIDSKELGHTKPGNYIY--EFLSELNITSETSKKLIDTIDGA 229
Query: 380 TKAIKAASDAESEGVHLSGGSAMTXXXXXXXXXXXXAENG--RHSNDYQLALQRFAKREG 437
+ ++ + AE+ G + + + G H+ Y+ + + G
Sbjct: 230 SLLLEEGNSAET-GPGMKAKATVCRLETIRDILDIIFRGGGQSHAKYYRFHVNECQQNSG 288
Query: 438 NSVTSFIGWKCVMSLWCLNPAVVFRDIADLTL-SVILTSGTLSPMGSFASELGVQFEACM 496
+++ +S WC NP + + L + S+ILTSGTLSP+ S A EL ++F +
Sbjct: 289 DALKVLGKVSRTLSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLALELNLEFPVRL 348
Query: 497 EAPHVINADSQVFATVLSSGPTGRRLNASYRTANEYSFQDELGATLEEICRVVPGGALVF 556
E PHVI +D Q++ V+ GP+G LN+SYRT ++ ELG T+ R+VP G LVF
Sbjct: 349 ENPHVIASD-QIWVGVVPVGPSGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVF 407
Query: 557 FPSYNLLEKLQRRWSQTGQ---------WARLEAQKHVCVEPRGSTEELEPVLKGYYNAI 607
FPSY++++K W W R+ K +EPR S+ + NAI
Sbjct: 408 FPSYSMMDKCINCWKDRNHENSSDEHTIWQRICKHKQPVIEPRQSS--------NFPNAI 459
Query: 608 LXXXXXXXXXXXXXQIVKNRVTKDSSQESAKGGAAFLAVCRGKVSEGIDFSDDKARVV 665
++S+ GA F AVCRGKVSEG+DF+D R V
Sbjct: 460 EDYAAKL-------------------RDSSTTGAIFFAVCRGKVSEGLDFADRAGRAV 498
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 40,239,859
Number of extensions: 1677470
Number of successful extensions: 3605
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3601
Number of HSP's successfully gapped: 3
Length of query: 1187
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1075
Effective length of database: 11,187,833
Effective search space: 12026920475
Effective search space used: 12026920475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 162 (67.0 bits)