BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0590800 Os01g0590800|Os01g0590800
(567 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0590800 Conserved hypothetical protein 1075 0.0
Os01g0590200 Conserved hypothetical protein 271 7e-73
Os01g0590100 153 3e-37
Os10g0351414 Endonuclease/exonuclease/phosphatase domain co... 97 2e-20
Os04g0371400 97 3e-20
Os03g0189500 96 7e-20
Os06g0484800 RNA-directed DNA polymerase (Reverse transcrip... 86 7e-17
Os11g0130600 Conserved hypothetical protein 77 4e-14
Os08g0372400 75 2e-13
>Os01g0590800 Conserved hypothetical protein
Length = 567
Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/567 (92%), Positives = 523/567 (92%)
Query: 1 MASWEDXXXXXXXXXXXXXXCTDLIMPPLRPKSPPXXXXXXXXXXXXXXXTTSYVASAHP 60
MASWED CTDLIMPPLRPKSPP TTSYVASAHP
Sbjct: 1 MASWEDEPSGGSREPSEPSGCTDLIMPPLRPKSPPELLDRLLLHDEEEEETTSYVASAHP 60
Query: 61 APIEYGSDDDAGLTRFVDDMYSCVELDDVVDKETVCPAVLFVFPVDPFQTFLFNVGLESI 120
APIEYGSDDDAGLTRFVDDMYSCVELDDVVDKETVCPAVLFVFPVDPFQTFLFNVGLESI
Sbjct: 61 APIEYGSDDDAGLTRFVDDMYSCVELDDVVDKETVCPAVLFVFPVDPFQTFLFNVGLESI 120
Query: 121 KKINNHIHFLHCMQRVEVGPADVEQGFLKFTPKEISRKWLATYIRRNAEHTEAYKEFVAS 180
KKINNHIHFLHCMQRVEVGPADVEQGFLKFTPKEISRKWLATYIRRNAEHTEAYKEFVAS
Sbjct: 121 KKINNHIHFLHCMQRVEVGPADVEQGFLKFTPKEISRKWLATYIRRNAEHTEAYKEFVAS 180
Query: 181 GYDYAQLLRYPLRLFPKTSYHCIKKSIYCDHHEYLTFTTSETASTIGMNEPNDTLQIFSL 240
GYDYAQLLRYPLRLFPKTSYHCIKKSIYCDHHEYLTFTTSETASTIGMNEPNDTLQIFSL
Sbjct: 181 GYDYAQLLRYPLRLFPKTSYHCIKKSIYCDHHEYLTFTTSETASTIGMNEPNDTLQIFSL 240
Query: 241 KLSSNESYPISVYGIFAVRDELDRLRNYVFNRTRDNPVLIEQAESEGGGSDDKQLLSEYA 300
KLSSNESYPISVYGIFAVRDELDRLRNYVFNRTRDNPVLIEQAESEGGGSDDKQLLSEYA
Sbjct: 241 KLSSNESYPISVYGIFAVRDELDRLRNYVFNRTRDNPVLIEQAESEGGGSDDKQLLSEYA 300
Query: 301 EIENRGLKDPMIYGRIPSDRCLLDVDCMFLLNSVEAVIQVFTKDDSDNPHRVRFTAFSSG 360
EIENRGLKDPMIYGRIPSDRCLLDVDCMFLLNSVEAVIQVFTKDDSDNPHRVRFTAFSSG
Sbjct: 301 EIENRGLKDPMIYGRIPSDRCLLDVDCMFLLNSVEAVIQVFTKDDSDNPHRVRFTAFSSG 360
Query: 361 FDHEIVLYDDRLCKKGKLFQNVVAVKSKEKLVIRLEFEGSTFRWTFQXXXXXXXXXXXXX 420
FDHEIVLYDDRLCKKGKLFQNVVAVKSKEKLVIRLEFEGSTFRWTFQ
Sbjct: 361 FDHEIVLYDDRLCKKGKLFQNVVAVKSKEKLVIRLEFEGSTFRWTFQDGAVAAVSSPDDS 420
Query: 421 XXKLFDVVVQIIQQETKDKLCWKFTNNGICSTKSAYKEVYKREISNAHQLWKARNDLKFQ 480
KLFDVVVQIIQQETKDKLCWKFTNNGICSTKSAYKEVYKREISNAHQLWKARNDLKFQ
Sbjct: 421 VSKLFDVVVQIIQQETKDKLCWKFTNNGICSTKSAYKEVYKREISNAHQLWKARNDLKFQ 480
Query: 481 GKIKEPTQVCMEAKAMIKTYTNFLSNDLMQEDLDEEDTNRRMGGAASISTGNGDCQILEV 540
GKIKEPTQVCMEAKAMIKTYTNFLSNDLMQEDLDEEDTNRRMGGAASISTGNGDCQILEV
Sbjct: 481 GKIKEPTQVCMEAKAMIKTYTNFLSNDLMQEDLDEEDTNRRMGGAASISTGNGDCQILEV 540
Query: 541 HFLTDSAIIARTLAREETFKKNQGIGA 567
HFLTDSAIIARTLAREETFKKNQGIGA
Sbjct: 541 HFLTDSAIIARTLAREETFKKNQGIGA 567
>Os01g0590200 Conserved hypothetical protein
Length = 394
Score = 271 bits (694), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 156/291 (53%), Positives = 188/291 (64%), Gaps = 31/291 (10%)
Query: 145 QGFLKFTPKEISRKWLATYIRRNAEHTEAYKEFVASGYD--YAQLLRYPLRLFPKTSYHC 202
Q F K KEI RKWL TY +RN E A +EF G D A +PL+ P+T+ C
Sbjct: 78 QNFTKEQAKEIIRKWLETYDKRNREFMVACEEFQKQGGDETSASCPVFPLKPLPETTDFC 137
Query: 203 IKKSIYCDHHEYLTFTTSETASTIGMNEPNDTLQIFSLKLSSNESYPISVYGIFAVRDEL 262
KS+ C H EY T TSETASTIG EP + LQIFSL+LSS+ SYPISVYGIFAVRD L
Sbjct: 138 TTKSL-CYHREYKTNDTSETASTIGWLEPKEMLQIFSLRLSSSMSYPISVYGIFAVRDYL 196
Query: 263 DRLRNYVFNRTRDNPVLIEQ---------------------------AESEGGGSDDKQL 295
D LRNYVFNRTRD+PV++EQ + EGG S+DKQL
Sbjct: 197 DPLRNYVFNRTRDDPVIVEQDSFTLPLCSPCRGMYVVEYALFEVDLWVKMEGGVSNDKQL 256
Query: 296 LSEYAEIENRGLKDPMIYGRIPSDRCLLDVDCMFLLNSVEAVIQVFTKDDSDNPHRVRFT 355
+S Y EI RG+ + I GRI SD C LD+ M+L S+EAVIQV T+ DS++P VRFT
Sbjct: 257 VSAYVEIFARGVFNKEIRGRILSDHCYLDIHYMYLSQSIEAVIQVSTEIDSNDPRHVRFT 316
Query: 356 AFSSGFDHEIVLYDDRLCKKGKLFQNVVAVKSKEKLVIRLEFEGSTFRWTF 406
AF SGFD EI+L++ + CK K FQ++VA+KSK KLV+ LEFEGS F WTF
Sbjct: 317 AFCSGFDREILLFNGKFCKD-KSFQHIVAMKSKGKLVVHLEFEGSLFCWTF 366
>Os01g0590100
Length = 285
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Query: 145 QGFLKFTPKEISRKWLATYIRRNAEHTEAYKEFVASGYDYAQLLR--YPLRLFPKTSYHC 202
Q F K KEI RKWL TY ++N E A +EF G D R +P + P+T+ C
Sbjct: 142 QNFTKEQEKEIMRKWLETYDKKNREFMVACEEFQKQGGDETSASRPVFPFKPLPETTDFC 201
Query: 203 IKKSIYCDHHEYLTFTTSETASTIGMNEPNDTLQIFSLKLSSNESYPISVYGIFAVRDEL 262
I KS+ C H EY T TSETASTIG EP + LQIFS KLSS+ SYPISVYGIFAVRD L
Sbjct: 202 ITKSL-CYHREYKTNDTSETASTIGWREPKEMLQIFSKKLSSSMSYPISVYGIFAVRDYL 260
Query: 263 DRLRNYVFNRTRDNPVLIEQ 282
D LRNYVFNRTRD+PV++EQ
Sbjct: 261 DPLRNYVFNRTRDDPVIVEQ 280
>Os10g0351414 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 912
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 429 VQIIQQETKDKLCWKFTNNGICSTKSAYKEVYKREISNAHQLWKARNDLKFQGKIKEPTQ 488
VQI+Q E +D+LCWK+T +G+CS KSAYK +Y N +Q+WKARND+ F+ KI EP Q
Sbjct: 633 VQIMQGEEEDRLCWKYTPSGVCSAKSAYKTIYNEMYPNQNQIWKARNDINFKTKIWEPQQ 692
Query: 489 VCMEAKAMIKTYTNF--LSNDLMQEDLDEEDTNRRMGGAASISTG 531
VC A+AM KTY + + D Q D + + N I TG
Sbjct: 693 VCNAAQAMAKTYESVHQMEEDSCQ-DFNRAEENNIRNSIVKIPTG 736
>Os04g0371400
Length = 777
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 54/72 (75%)
Query: 429 VQIIQQETKDKLCWKFTNNGICSTKSAYKEVYKREISNAHQLWKARNDLKFQGKIKEPTQ 488
VQI+Q E +D+LCWK+T +G+CS KSAYK +Y N +Q+WKARND+ F+ KI EP Q
Sbjct: 416 VQIMQGEEEDRLCWKYTPSGVCSAKSAYKTIYNEMYPNQNQIWKARNDINFKTKIWEPQQ 475
Query: 489 VCMEAKAMIKTY 500
VC A+AM KTY
Sbjct: 476 VCNAAQAMAKTY 487
>Os03g0189500
Length = 312
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 54/72 (75%)
Query: 429 VQIIQQETKDKLCWKFTNNGICSTKSAYKEVYKREISNAHQLWKARNDLKFQGKIKEPTQ 488
VQI+Q E +D+LCWK+T +G+CS KSAYK +Y N +Q+WKARND+ F+ KI EP Q
Sbjct: 35 VQIMQGEEEDRLCWKYTPSGVCSAKSAYKTIYNEMYPNQNQVWKARNDINFKTKIWEPQQ 94
Query: 489 VCMEAKAMIKTY 500
VC A+AM KTY
Sbjct: 95 VCNAAQAMAKTY 106
>Os06g0484800 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 935
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 49/70 (70%)
Query: 429 VQIIQQETKDKLCWKFTNNGICSTKSAYKEVYKREISNAHQLWKARNDLKFQGKIKEPTQ 488
V I+Q + +DKL WK T NG C+TKSAYKE YKRE QLWKARNDLKFQG +KEP+Q
Sbjct: 739 VPIMQNDAEDKLFWKHTRNGQCNTKSAYKEFYKRENQTIQQLWKARNDLKFQGIMKEPSQ 798
Query: 489 VCMEAKAMIK 498
E + K
Sbjct: 799 GNTEEEGTSK 808
>Os11g0130600 Conserved hypothetical protein
Length = 296
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 36/202 (17%)
Query: 228 MNEPNDTLQIFSLKLSSNESY---PISVYGIFAVRDELDRLRNYVFNRTRDNPVLIEQ-- 282
++E +QIFSLKLS+ + P+ +YG FAVRD LD LRNY+FNRTRD+P ++ Q
Sbjct: 45 IHEEQFMMQIFSLKLSNITATVDGPVHLYGYFAVRDHLDPLRNYIFNRTRDDPFIMGQDN 104
Query: 283 ------------AESEGGGSDDKQLLSEYAEIENRGLKD---PMIYG------------- 314
G G+ + L+ +I+N +D +I G
Sbjct: 105 GVDSDNSLIPMPGPKRGIGNQARVLIEFDMKIKNGETRDDDFQLIDGAIICSEFVLPNRV 164
Query: 315 ---RIPSDRCLLDVDCMFLLNSVEAVIQVFTKDDSDNPHRVRFTAFSSGFDHEIVLYDDR 371
RI D +D+ L ++VEA +QV N + +++S +I L+D
Sbjct: 165 FTQRIEGDCGAVDISLALLHSTVEATVQVSISQVHGNGFSLSLYSYTSRIPEKIQLFDGF 224
Query: 372 LCKKGKLFQNVVAVKSKEKLVI 393
+ K L + VVAV L++
Sbjct: 225 ISKPCDLNRFVVAVVVNTPLIL 246
>Os08g0372400
Length = 300
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 442 WKFTNNGICSTKSAYKEVYKR-EISNAHQLWKARNDLKFQGKIKEPTQV 489
WK + NGIC+TKSAYKE+ K +I N QLWKARNDLKFQG +KEPTQV
Sbjct: 97 WKHSKNGICNTKSAYKEIMKSDQIHNFQQLWKARNDLKFQGILKEPTQV 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,621,509
Number of extensions: 709349
Number of successful extensions: 1925
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1929
Number of HSP's successfully gapped: 9
Length of query: 567
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 461
Effective length of database: 11,501,117
Effective search space: 5302014937
Effective search space used: 5302014937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)