BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0589300 Os01g0589300|AK103040
         (300 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0589300  Similar to Single myb histone 1                     492   e-139
Os12g0613300  Similar to Single myb histone 6                     226   1e-59
Os01g0708000  Similar to Single myb histone 4                     142   4e-34

>Os01g0589300 Similar to Single myb histone 1
          Length = 300

 Score =  492 bits (1267), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/300 (83%), Positives = 250/300 (83%)

Query: 1   MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA 60
           MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA
Sbjct: 1   MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA 60

Query: 61  GGYGSRERARVALKGGKRGPKALAEPMDADEKNPXXXXXXXXXXQPLAVVVEPMQLESTP 120
           GGYGSRERARVALKGGKRGPKALAEPMDADEKNP          QPLAVVVEPMQLESTP
Sbjct: 61  GGYGSRERARVALKGGKRGPKALAEPMDADEKNPDIDDNAIIDAQPLAVVVEPMQLESTP 120

Query: 121 EKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLKALVATG 180
           EKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLKALVATG
Sbjct: 121 EKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLKALVATG 180

Query: 181 KLIKVNQKYRIAPSSNSSGGKSIKVYSTGEMNIENNNVRQLSKPQVDAELDKMKSMSKXX 240
           KLIKVNQKYRIAPSSNSSGGKSIKVYSTGEMNIENNNVRQLSKPQVDAELDKMKSMSK  
Sbjct: 181 KLIKVNQKYRIAPSSNSSGGKSIKVYSTGEMNIENNNVRQLSKPQVDAELDKMKSMSKEE 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDAVVTTMQNRNHASAMLRAC 300
                                                 FLDAVVTTMQNRNHASAMLRAC
Sbjct: 241 AASFAARAVAEAEAAIAEAEEAARAAEAAEAEADAAKAFLDAVVTTMQNRNHASAMLRAC 300



>Os12g0613300 Similar to Single myb histone 6
          Length = 297

 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/243 (48%), Positives = 167/243 (68%), Gaps = 14/243 (5%)

Query: 1   MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA 60
           MGAPKQ+WTAEEE+ALKAG+AKHG GKWRTIL+DP+F+ +LR RSNVDLKDKWRN++VT 
Sbjct: 1   MGAPKQKWTAEEESALKAGIAKHGAGKWRTILKDPDFSNVLRYRSNVDLKDKWRNMNVTV 60

Query: 61  GGYGSRERARV-ALKGGKRGPKALAEPMDADEKNPXXXXXXXXXXQPLAVVVEPMQLEST 119
              G+R+R +   +K  +  PK         E +                V EP+ L ++
Sbjct: 61  NASGARDRVKAPVVKKPRSAPK--------HEGHSTSTAIAAVTSDGDDDVAEPVPLATS 112

Query: 120 PEKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLKALVAT 179
              ++S++RLD++I+EA++ L EP+GS +T I++YIEEQYWPP DF  +LS+KL  L A+
Sbjct: 113 TSSKRSLSRLDNIIVEAVRSLNEPTGSYKTAIANYIEEQYWPPADFDHVLSSKLNDLTAS 172

Query: 180 GKLIKVNQKYRIAPSSNSSGGKSIKVYSTGEM-----NIENNNVRQLSKPQVDAELDKMK 234
           GKLIKVN+KYRIAPSS+ S G+S KV    ++      ++  +V  L+K Q+DAEL +M+
Sbjct: 173 GKLIKVNRKYRIAPSSSLSEGRSSKVVLLEDIKKEPTKLDREDVAVLTKSQIDAELARMR 232

Query: 235 SMS 237
           +M+
Sbjct: 233 TMT 235



>Os01g0708000 Similar to Single myb histone 4
          Length = 304

 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 118/203 (58%), Gaps = 31/203 (15%)

Query: 1   MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTA 60
           MGAPKQ+WT+EEE AL+ GV KHG GKWRTI +DPEF+ +L  RSN+DLKDKWRNLS +A
Sbjct: 1   MGAPKQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNLSFSA 60

Query: 61  GGYGSRERARVA-LKGGKRGPKA-------LAEPMDADEKNPXXXXXXXXXXQPLAVVVE 112
            G GSR++ +V  +KG              +  P    E +P                  
Sbjct: 61  SGLGSRDKLKVPRIKGPSSSTSPSSQTPLLVLPPNKVAEASPS----------------- 103

Query: 113 PMQLESTPEKEKSVARL-DDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLST 171
                + PEK     ++ + +++EA+ ++ +P+GS+   I  YIE+++    +F+RLL+ 
Sbjct: 104 -----ADPEKSSQDVKIPNSMVIEALCEIGDPNGSDVDAICHYIEQRHEVQANFRRLLTA 158

Query: 172 KLKALVATGKLIKVNQKYRIAPS 194
           KL+ L+A  K+ K+++ YRI  S
Sbjct: 159 KLRRLIAAKKIEKIDRSYRITES 181



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,307,075
Number of extensions: 311563
Number of successful extensions: 890
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 892
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)