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Os01g0708000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Single myb histone 4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0138) R2 : 0.0011
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0205 (0.029) R2dN8 : 0.00142 R2N8 : 0.0011
σ : 0.259
deviance : 30.82
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.71 0.219 12.5 -0.58 0.246 0.065 -0.163 -1.49 -0.168 18.2 19.8 3162 -- --
23.64 0.226 12.4 -0.523 0.246 0.538 -0.158 -- -0.154 17.7 18.02 10369 -- --
21.77 0.217 12.5 -0.578 0.248 0.0641 -- -1.5 -0.171 18.2 19.8 3181 -- --
22.8 0.222 12.4 -0.576 0.262 0.526 -- -- -0.143 18.1 16.1 24144 -- --
24.84 0.232 12.5 -0.569 -- 0.0771 -- -1.46 -0.171 -- 19.7 3354 -- --
26.99 0.244 12.4 -0.172 0.24 -- -0.11 -- -0.0346 18.2 -- -- -- --
27.02 0.243 12.4 -0.171 0.239 -- -- -- -0.0351 18.4 -- -- -- --
25.53 0.235 12.4 -0.627 -- 0.567 -- -- -0.166 -- 14.45 42274 -- --
27.13 0.243 12.4 -- 0.226 0.203 -- -- -0.0505 17.9 11.89 40434 -- --
29.99 0.256 12.4 -0.177 -- -- -- -- -0.0402 -- -- -- -- --
27.79 0.247 12.4 -- 0.242 -- -- -- -0.0161 18.3 -- -- -- --
30.02 0.255 12.4 -- -- 0.16 -- -- -0.0376 -- 10.13 47520 -- --
30.82 0.259 12.4 -- -- -- -- -- -0.0205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.96 humidity 90 14400 > th dose dependent rect. 3 6
3 21.01 temperature 20 4320 > th dose independent rect. 20 3
4 21.02 humidity 90 14400 > th dose dependent rect. 4 4
5 21.03 temperature 20 4320 > th dose independent rect. 18 6
7 21.04 temperature 20 4320 < th dose independent rect. 20 3
12 21.06 humidity 90 14400 > th dose dependent rect. 24 14
20 21.08 temperature 20 4320 < th dose independent rect. 19 5
47 21.15 humidity 90 14400 > th dose dependent sin 5 NA
50 21.17 humidity 90 14400 > th dose independent rect. 23 1
69 21.22 radiation 10 4320 > th dose dependent rect. 17 15
82 21.26 radiation 10 4320 > th dose dependent rect. 5 3
97 21.27 humidity 90 14400 > th dose independent rect. 23 10
119 21.34 humidity 50 43200 < th dose independent rect. 8 1
132 21.37 temperature 10 4320 > th dose dependent rect. 21 1
134 21.37 temperature 30 4320 < th dose dependent rect. 20 2
151 21.40 humidity 50 43200 > th dose independent rect. 8 1
197 21.48 wind 5 43200 > th dose dependent rect. 21 3
208 21.50 humidity 90 14400 > th dose independent sin 8 NA
216 21.51 humidity 90 14400 > th dose independent rect. 2 7
219 21.51 wind 7 43200 > th dose independent rect. 18 12
230 21.51 humidity 90 14400 > th dose dependent rect. 12 19
335 21.57 humidity 90 14400 > th dose independent rect. 3 5
337 21.57 wind 7 43200 < th dose independent rect. 18 12
349 21.58 temperature 20 4320 > th dose independent sin 15 NA
351 21.58 wind 7 43200 > th dose independent rect. 21 2
364 21.59 wind 7 43200 < th dose independent rect. 21 2
366 21.59 wind 7 43200 < th dose independent rect. 20 10
374 21.59 humidity 90 43200 > th dose dependent rect. 10 1
381 21.59 atmosphere 995 43200 < th dose dependent rect. 10 19
389 21.60 temperature 20 1440 > th dose independent rect. 5 2
402 21.61 temperature 20 4320 < th dose independent sin 15 NA
403 21.61 temperature 20 1440 < th dose independent rect. 5 1
460 21.63 atmosphere 995 43200 < th dose dependent rect. 15 20
488 21.64 atmosphere 995 43200 < th dose dependent rect. 17 23
491 21.65 radiation 1 43200 > th dose independent rect. 14 1
503 21.65 atmosphere 995 43200 < th dose dependent rect. 21 19
525 21.66 radiation 1 43200 < th dose independent rect. 14 1
531 21.66 atmosphere 995 43200 < th dose independent rect. 18 20
533 21.66 atmosphere 995 43200 < th dose dependent no NA NA
534 21.66 radiation 1 43200 < th dose dependent rect. 14 1
540 21.66 wind 5 43200 > th dose dependent rect. 20 9
567 21.67 radiation 30 4320 < th dose independent rect. 16 16
569 21.67 atmosphere 995 43200 < th dose independent rect. 21 18
576 21.67 radiation 1 43200 < th dose dependent rect. 11 5
580 21.67 wind 5 43200 > th dose dependent rect. 18 12
593 21.68 wind 7 43200 > th dose independent sin 10 NA
594 21.68 humidity 90 43200 > th dose independent rect. 12 1
596 21.68 atmosphere 995 43200 > th dose independent rect. 3 10
602 21.68 atmosphere 995 43200 > th dose independent rect. 18 20
604 21.68 humidity 90 43200 > th dose dependent rect. 10 3
624 21.69 wind 7 43200 < th dose independent sin 10 NA
626 21.69 radiation 1 43200 > th dose independent rect. 11 4
636 21.69 temperature 20 4320 > th dose dependent rect. 17 1
637 21.69 humidity 90 43200 > th dose dependent rect. 12 1
651 21.69 atmosphere 995 43200 < th dose dependent rect. 1 23
653 21.70 radiation 1 43200 < th dose independent rect. 11 4
666 21.70 humidity 90 14400 > th dose dependent no NA NA
683 21.71 atmosphere 995 43200 < th dose independent sin 6 NA
684 21.71 radiation 1 43200 > th dose independent rect. 11 2
685 21.71 radiation 1 43200 < th dose independent rect. 11 2
694 21.71 atmosphere 995 43200 > th dose independent rect. 23 15
714 21.72 humidity 90 14400 > th dose independent rect. 5 2
728 21.72 radiation 1 43200 < th dose dependent rect. 11 2
749 21.73 humidity 90 43200 < th dose independent rect. 12 1
780 21.74 wind 1 14400 < th dose independent rect. 22 4
783 21.74 humidity 90 14400 > th dose independent rect. 19 9
791 21.74 humidity 50 43200 < th dose dependent rect. 8 1
845 21.76 wind 1 14400 < th dose independent rect. 20 6
856 21.76 wind 5 43200 > th dose dependent sin 10 NA
868 21.76 wind 1 14400 < th dose dependent rect. 19 7
895 21.77 wind 1 14400 < th dose dependent rect. 21 5
912 21.78 humidity 90 43200 > th dose independent rect. 10 3
923 21.78 temperature 10 4320 > th dose dependent sin 15 NA
924 21.78 atmosphere 995 43200 < th dose dependent sin 7 NA
944 21.78 atmosphere 995 43200 < th dose dependent rect. 21 14