BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0708000 Os01g0708000|AJ495797
(304 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G49950.3 | chr1:18494439-18496713 REVERSE LENGTH=301 152 2e-37
AT1G72740.1 | chr1:27380499-27382687 REVERSE LENGTH=288 150 8e-37
AT1G17520.1 | chr1:6024959-6027224 REVERSE LENGTH=297 149 3e-36
AT3G49850.1 | chr3:18489451-18490731 FORWARD LENGTH=296 130 1e-30
AT5G67580.1 | chr5:26955843-26957073 REVERSE LENGTH=300 115 2e-26
AT1G54260.1 | chr1:20257340-20259176 FORWARD LENGTH=198 57 1e-08
AT1G17460.2 | chr1:5999519-6002546 FORWARD LENGTH=625 52 3e-07
AT1G15720.1 | chr1:5406138-5407310 FORWARD LENGTH=391 48 6e-06
AT1G72650.2 | chr1:27350253-27353483 FORWARD LENGTH=631 48 7e-06
>AT1G49950.3 | chr1:18494439-18496713 REVERSE LENGTH=301
Length = 300
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 113/187 (60%), Gaps = 7/187 (3%)
Query: 1 MGAPKQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNLSFSA 60
MGAPKQKWT EEE AL+ GV+KHGPGKWRTI KDPEFS VL RSN+DLKDKWRN+S A
Sbjct: 1 MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMA 60
Query: 61 SGLGSRDK--LKVPRIKGXXXXXXXXXXXXXXXXXXNKVAEASP----SADPEKSSQDVK 114
+G GSR+K L V R + +A+ S++P +V+
Sbjct: 61 NGWGSREKSRLAVKRTFSLPKQEENSLALTNSLQSDEENVDATSGLQVSSNPPPRRPNVR 120
Query: 115 IPNSMVIEALCEIGDPNGSDVDAICHYIEQRHEVQANFRRLLTAKLRRLIAAKKIEKIDR 174
+ +S+++EA+ + +P G + I YIE ++ +F+RLL+ KL+ L + K+ K+ R
Sbjct: 121 L-DSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLVKVKR 179
Query: 175 SYRITES 181
YRI S
Sbjct: 180 KYRIPNS 186
>AT1G72740.1 | chr1:27380499-27382687 REVERSE LENGTH=288
Length = 287
Score = 150 bits (379), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 136/291 (46%), Gaps = 18/291 (6%)
Query: 1 MGAPKQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNLSFSA 60
MG K KWT+EEEEAL G+ KHGPGKW+ I +DPEF+ L RSNIDLKDKWRNLS
Sbjct: 1 MGNQKLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLSVPP 60
Query: 61 SGLGSRDKLKVPRIK------GXXXXXXXXXXXXXXXXXXNKVAEASPS-ADPEKSSQDV 113
+K + ++K PS P++++++
Sbjct: 61 GTQSLTNKARPAKVKEEGDTPAADANDAVTIPRPIPTIPPPPGRRTLPSELIPDENTKNA 120
Query: 114 KIPNSMVIEALCEIGDPNGSDVDAICHYIEQRHEVQANFRRLLTAKLRRLIAAKKIEK-- 171
+ ++ EAL + D NGSDV +I H+IE RHEV NFRR+L+ +LRRL A K+EK
Sbjct: 121 PRYDGVIFEALSALADGNGSDVSSIYHFIEPRHEVPPNFRRILSTRLRRLAAQSKLEKVS 180
Query: 172 ----IDRSYRITESYAAKVSQXXXXXXXXXXXXXXXXXXQNLGSFXXXXXXXXXXXXXXX 227
I Y+I + K+ N S
Sbjct: 181 TFKSIQNFYKIPDPSGTKIG-----VPKPKETHTKLRQANNQTSADSQQMIEEAAITAAC 235
Query: 228 XXXXXXXKSHLANEHMTEAERIFKLAEETESLVTLATEIYERCSRGEILTI 278
K +A E E++ K+AEE L+ +ATE++E CS GE + +
Sbjct: 236 KVVEAENKIDVAKLAAEEFEKMTKIAEENRKLLVIATEMHELCSCGETMLL 286
>AT1G17520.1 | chr1:6024959-6027224 REVERSE LENGTH=297
Length = 296
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 144/297 (48%), Gaps = 21/297 (7%)
Query: 1 MGAPKQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNLSFSA 60
MG K KWT+EEEEAL GV KHGPGKW+ I +DPE + LSSRSNIDLKDKWRNLS +
Sbjct: 1 MGNQKLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLSVAP 60
Query: 61 SGLGSRDKLKVPRIKGXXXXXXXXXXXXXXXXXXNKVAEASPSAD-PEKSSQDVKIPNS- 118
GS+DK++ P+IK + +SP A P S D+ I +S
Sbjct: 61 GIQGSKDKIRTPKIKAAAFHLAAAAAAAIVTPTHS--GHSSPVATLPRSGSSDLSIDDSF 118
Query: 119 --------------MVIEALCEIGDPNGSDVDAICHYIEQRHEVQANFRRLLTAKLRRLI 164
M+ EAL + D NGSDV AI ++IEQR EV NFRR+L+++LRRL
Sbjct: 119 NIVVDPKNAPRYDGMIFEALSNLTDANGSDVSAIFNFIEQRQEVPPNFRRMLSSRLRRLA 178
Query: 165 AAKKIEKIDRSYRITESYAAK---VSQXXXXXXXXXXXXXXXXXXQNLGSFXXXXXXXXX 221
A K+EK+ Y + Q N
Sbjct: 179 AQGKLEKVSHLKSTQNFYKMNDNSLVQRTPHVARPKESNTKSRQQTNSQGPSISQQIVEA 238
Query: 222 XXXXXXXXXXXXXKSHLANEHMTEAERIFKLAEETESLVTLATEIYERCSRGEILTI 278
K ++ E ER+ KLAEE + ++ +A E++E CS+G+I+ +
Sbjct: 239 SITAAYKLVEVENKLDVSKGAAEEIERLMKLAEEADEMLVIAREMHEECSQGKIMYL 295
>AT3G49850.1 | chr3:18489451-18490731 FORWARD LENGTH=296
Length = 295
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 109/195 (55%), Gaps = 15/195 (7%)
Query: 1 MGAPKQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNLSFSA 60
MGAPK KWT EEE AL+ GVLKHG GKWRTI DP +S +L SRSN+DLKDKWRN+S +A
Sbjct: 1 MGAPKLKWTPEEETALKAGVLKHGTGKWRTILSDPVYSTILKSRSNVDLKDKWRNISVTA 60
Query: 61 SGLGSRDK----LKVPRIKGXXXXXXXXXXXXXXXXXXN----KVAEASP---SADPEKS 109
GSR K LK + G + ++ SP S +P +
Sbjct: 61 L-WGSRKKAKLALKRTPLSGSRQDDNATAITIVSLANGDVGGQQIDAPSPPAGSCEPPRP 119
Query: 110 SQDVKIPNSMVIEALCEIGDPNGSDVDAICHYIEQRHEVQANFRRLLTAKLRRLIAAKKI 169
S V + +++EA+ + P G D +I YIE+ ++Q + +RL+T++L+ L +
Sbjct: 120 STSV---DKIILEAITSLKRPFGPDGKSILMYIEENFKMQPDMKRLVTSRLKYLTNVGTL 176
Query: 170 EKIDRSYRITESYAA 184
K YRI+++Y A
Sbjct: 177 VKKKHKYRISQNYMA 191
>AT5G67580.1 | chr5:26955843-26957073 REVERSE LENGTH=300
Length = 299
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 98/192 (51%), Gaps = 11/192 (5%)
Query: 1 MGAPKQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNLSFSA 60
MGAPKQKWT EEE AL+ GVLKHG GKWRTI D EFS +L SRSN+DLKDKWRN+S +A
Sbjct: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA 60
Query: 61 SGLGSRDKLKV------PRIKGXXXXXXXXXXXXXXXXXXNKVAEASPSADPEK----SS 110
GSR K K+ P K K S S
Sbjct: 61 L-WGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAKPTSPGGSGGGSPRTCASK 119
Query: 111 QDVKIPNSMVIEALCEIGDPNGSDVDAICHYIEQRHEVQANFRRLLTAKLRRLIAAKKIE 170
+ + + ++ EA+ + + GSD +I YIE+ + N +R + +L+ L + +
Sbjct: 120 RSITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLV 179
Query: 171 KIDRSYRITESY 182
KI YR + ++
Sbjct: 180 KIKHKYRFSSNF 191
>AT1G54260.1 | chr1:20257340-20259176 FORWARD LENGTH=198
Length = 197
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 117 NSMVIEALCEIGDPNGSDVDAICHYIEQRHEVQANFRRLLTAKLRRLIAAKKIEKIDRSY 176
++MV EA+ I D NGS++ I +IE +HEV NF++LL+ L L++ K++K+ Y
Sbjct: 8 DAMVFEAVSTINDENGSNLKEILRFIEGQHEVPQNFKKLLSYSLGILVSQDKLKKVRNRY 67
Query: 177 RITESYAAK 185
+I+ + A K
Sbjct: 68 KISVTKAIK 76
>AT1G17460.2 | chr1:5999519-6002546 FORWARD LENGTH=625
Length = 624
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 8 WTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNLSFSAS------ 61
WT E E L GV K+G GKW I+K FSP + R+ +DLKDKWRNL ++S
Sbjct: 519 WTISEVEKLVEGVSKYGVGKWTEIKK-LSFSP-YTHRTTVDLKDKWRNLQKASSSNRMEG 576
Query: 62 GLGSRDKLKVP 72
GL + +P
Sbjct: 577 GLKKHGSMAIP 587
>AT1G15720.1 | chr1:5406138-5407310 FORWARD LENGTH=391
Length = 390
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 8 WTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNL 56
WTSEE ALR GV ++G W+ I+ + V + RS +DLKDKWRNL
Sbjct: 341 WTSEEVAALREGVKEYGKS-WKDIKN--SYPVVFADRSEVDLKDKWRNL 386
>AT1G72650.2 | chr1:27350253-27353483 FORWARD LENGTH=631
Length = 630
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 8 WTSEEEEALRRGVLKHGPGKWRTIQKDPEFSPVLSSRSNIDLKDKWRNL---SFSASGLG 64
WT E L GV K+G GKW I+K S R+++DLKDKWRNL SF+ S
Sbjct: 543 WTLSEIAKLVEGVSKYGAGKWSEIKK--HLFSSHSYRTSVDLKDKWRNLLKTSFAQSPSN 600
Query: 65 SRDKLK 70
S LK
Sbjct: 601 SVGSLK 606
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,695,110
Number of extensions: 154919
Number of successful extensions: 521
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 11
Length of query: 304
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 206
Effective length of database: 8,419,801
Effective search space: 1734479006
Effective search space used: 1734479006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)