Os12g0613300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Single myb histone 6.
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Os12g0613300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Single myb histone 6.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.94 | 0.175 | 11.6 | -0.0584 | 0.307 | 0.308 | 0.0647 | 0.54 | 0.103 | 1.84 | 20.01 | 230 | -- | -- |
| 14.85 | 0.179 | 11.6 | -0.0918 | 0.313 | 0.232 | -0.0415 | -- | 0.0997 | 1.59 | 20.5 | 205 | -- | -- |
| 13.95 | 0.174 | 11.6 | -0.0632 | 0.307 | 0.306 | -- | 0.52 | 0.102 | 1.83 | 20.09 | 233 | -- | -- |
| 14.82 | 0.179 | 11.6 | -0.116 | 0.299 | 0.231 | -- | -- | 0.0951 | 1.57 | 20.4 | 194 | -- | -- |
| 18.33 | 0.199 | 11.6 | -0.0322 | -- | 0.302 | -- | 0.616 | 0.103 | -- | 20.8 | 1237 | -- | -- |
| 16.62 | 0.191 | 11.6 | -0.0596 | 0.261 | -- | -0.0746 | -- | 0.129 | 1.55 | -- | -- | -- | -- |
| 16.64 | 0.191 | 11.6 | -0.0571 | 0.261 | -- | -- | -- | 0.13 | 1.54 | -- | -- | -- | -- |
| 18.08 | 0.198 | 11.6 | -0.14 | -- | 0.261 | -- | -- | 0.0711 | -- | 25 | 982 | -- | -- |
| 15.2 | 0.182 | 11.6 | -- | 0.301 | 0.206 | -- | -- | 0.0995 | 1.53 | 20.5 | 164 | -- | -- |
| 20.81 | 0.213 | 11.6 | -0.0467 | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
| 16.73 | 0.191 | 11.6 | -- | 0.26 | -- | -- | -- | 0.136 | 1.53 | -- | -- | -- | -- |
| 18.41 | 0.2 | 11.6 | -- | -- | 0.246 | -- | -- | 0.0602 | -- | 24.94 | 989 | -- | -- |
| 20.87 | 0.213 | 11.6 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.42 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 17 |
| 3 | 12.59 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 14 | 12.91 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 9 |
| 36 | 13.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 37 | 13.19 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 18 |
| 43 | 13.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 49 | 13.29 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 16 |
| 51 | 13.30 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 15 |
| 71 | 13.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 77 | 13.45 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 20 |
| 119 | 13.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 143 | 13.66 | temperature | 15 | 30 | > th | dose dependent | rect. | 18 | 18 |
| 145 | 13.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 146 | 13.68 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 147 | 13.68 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 204 | 13.77 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 231 | 13.81 | temperature | 20 | 270 | < th | dose independent | rect. | 7 | 22 |
| 235 | 13.82 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 11 |
| 242 | 13.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 295 | 13.88 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 13 |
| 305 | 13.89 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 329 | 13.91 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 15 |
| 350 | 13.93 | temperature | 20 | 270 | > th | dose independent | sin | 13 | NA |
| 410 | 13.97 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 2 |
| 411 | 13.97 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 4 |
| 419 | 13.97 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 442 | 13.98 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 459 | 13.99 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 495 | 14.01 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 509 | 14.01 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 13 |
| 543 | 14.02 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 545 | 14.03 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 553 | 14.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 570 | 14.04 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 571 | 14.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 601 | 14.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 649 | 14.09 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 657 | 14.09 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 712 | 14.12 | temperature | 20 | 720 | < th | dose independent | sin | 21 | NA |
| 714 | 14.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 719 | 14.12 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 766 | 14.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 768 | 14.15 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 828 | 14.17 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 835 | 14.18 | temperature | 20 | 90 | > th | dose dependent | sin | 9 | NA |
| 852 | 14.18 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 853 | 14.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 855 | 14.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 856 | 14.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 877 | 14.19 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 890 | 14.20 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 903 | 14.21 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 905 | 14.21 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 17 |
| 951 | 14.22 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 959 | 14.23 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 10 |