BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0589000 Os01g0589000|AK099851
(438 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0589000 Nucleic acid-binding, OB-fold domain containin... 702 0.0
Os05g0535800 Nucleic acid-binding, OB-fold domain containin... 319 3e-87
Os03g0315800 Similar to 30S ribosomal protein S1, chloropla... 103 2e-22
Os03g0844900 RNA binding S1 domain containing protein 72 8e-13
>Os01g0589000 Nucleic acid-binding, OB-fold domain containing protein
Length = 438
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/438 (82%), Positives = 360/438 (82%)
Query: 1 MPPSMXXXXXXXXPRSLLFXXXXXXXXXXXXXALARAGRSQXXXXXXXXXXXXXXXXXMS 60
MPPSM PRSLLF ALARAGRSQ MS
Sbjct: 1 MPPSMAVAAAAAAPRSLLFPVSPSPSQPRRVPALARAGRSQRRHAALARPARRHLDDAMS 60
Query: 61 AGFVRSLNAPPDEDGARSGGRYDPRPGDFAVGVVVSGTEARLDVAVGADRXXXXXXXXXX 120
AGFVRSLNAPPDEDGARSGGRYDPRPGDFAVGVVVSGTEARLDVAVGADR
Sbjct: 61 AGFVRSLNAPPDEDGARSGGRYDPRPGDFAVGVVVSGTEARLDVAVGADRLATLLAKELL 120
Query: 121 XXYRADLPAFAEAAPPRXXXXXXXXXXXXXXXDRKPGERGGGRTLVPPGTVVFAEVLGRT 180
YRADLPAFAEAAPPR DRKPGERGGGRTLVPPGTVVFAEVLGRT
Sbjct: 121 PLYRADLPAFAEAAPPRPGSVGAVASPAAGEGDRKPGERGGGRTLVPPGTVVFAEVLGRT 180
Query: 181 LSGXXXXXXXXXXXXXAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELM 240
LSG AWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELM
Sbjct: 181 LSGRPLLSARRLFRRLAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELM 240
Query: 241 DRINTFTDLKNKVGCSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVHKIFPY 300
DRINTFTDLKNKVGCSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVHKIFPY
Sbjct: 241 DRINTFTDLKNKVGCSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVHKIFPY 300
Query: 301 GAQVRIAGTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVKSNVPDKIALSISDLES 360
GAQVRIAGTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVKSNVPDKIALSISDLES
Sbjct: 301 GAQVRIAGTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVKSNVPDKIALSISDLES 360
Query: 361 TPGLFLSEKARVFSEAEEMAERYREQLPADSKNAKLDADLPGGTIPFDDEATLYANWKWF 420
TPGLFLSEKARVFSEAEEMAERYREQLPADSKNAKLDADLPGGTIPFDDEATLYANWKWF
Sbjct: 361 TPGLFLSEKARVFSEAEEMAERYREQLPADSKNAKLDADLPGGTIPFDDEATLYANWKWF 420
Query: 421 KFLEDGKLGAVTTEHNGS 438
KFLEDGKLGAVTTEHNGS
Sbjct: 421 KFLEDGKLGAVTTEHNGS 438
>Os05g0535800 Nucleic acid-binding, OB-fold domain containing protein
Length = 592
Score = 319 bits (817), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/269 (59%), Positives = 191/269 (71%), Gaps = 14/269 (5%)
Query: 169 GTVVFAEVLGRTLSGXXXXXXXXXXXXXAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIE 228
GTVVF EVLGRTL G AWHR + QL+ PI+VKI+EWN GGLLTRIE
Sbjct: 251 GTVVFTEVLGRTLGGRPLLSARRLFRRVAWHR---IKQLNVPIKVKIFEWNAGGLLTRIE 307
Query: 229 GLRAFLPKFELMDRINTFTDLKNKVGCSIRVCITRLDEETNDLIISEKKAWEMTYLKEGT 288
GLRAFLPK E+M R FTDLKN VG I VCITR+DE+ N+LIISEK+AW MTYL+EGT
Sbjct: 308 GLRAFLPKPEMMTRPRNFTDLKNTVGQQIHVCITRIDEKANELIISEKEAWAMTYLREGT 367
Query: 289 LLQGIVHKIFPYGAQVRIAGTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVKSNVP 348
LLQG V K+FPYGAQ+ I TNR GLLH+SNI+RG++ SV D+LK+ EEVK +V+KS P
Sbjct: 368 LLQGTVRKLFPYGAQITIGDTNRGGLLHVSNITRGQLTSVGDVLKVGEEVKAIVIKSTAP 427
Query: 349 DKIALSISDLESTPGLFLSEKA----------RVFSEAEEMAERYREQLPADSKNAKLDA 398
+IALS DLES PGLFLS K +VFSEAEEMA+RYR+Q+ + A+LD+
Sbjct: 428 GRIALSTKDLESEPGLFLSNKEWDGEYTDVNNKVFSEAEEMAQRYRDQISEKHQPAELDS 487
Query: 399 DLPGGTIPFDDEATLYANWKWFKFLEDGK 427
PFDDEA YANWKW +F + K
Sbjct: 488 SF-DEVAPFDDEAVSYANWKWLRFSKSDK 515
>Os03g0315800 Similar to 30S ribosomal protein S1, chloroplast precursor (CS1)
Length = 390
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 9/204 (4%)
Query: 197 AWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFTDLKNKVGCS 256
AW R RQ+ D + K+ N GG++ +EGL+ F+P F + +T +L +K
Sbjct: 155 AWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVP-FSQVSSKSTAEELLDK---E 210
Query: 257 IRVCITRLDEETNDLIISEKKAW--EMTYLKEGTLLQGIVHKIFPYGAQVRIAGTNRSGL 314
+ + +DEE L++S +KA L G+++ G V + PYGA + I G N GL
Sbjct: 211 LPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGIN--GL 268
Query: 315 LHISNISRGRVLSVSDILKIDEEVKVLVVKSNVP-DKIALSISDLESTPGLFLSEKARVF 373
LH+S IS RV +S +L+ + +KV+++ + +++LS LE TPG + VF
Sbjct: 269 LHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVF 328
Query: 374 SEAEEMAERYREQLPADSKNAKLD 397
+A+EMA+ +R+++ A+ D
Sbjct: 329 EKADEMAQIFRQRIAQAEAMARAD 352
>Os03g0844900 RNA binding S1 domain containing protein
Length = 339
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 17/183 (9%)
Query: 198 WHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFTD--------L 249
W AR + +++++ N+GGL+ R L+ F+P L+ + D
Sbjct: 81 WQAARAERDQGKILKLQVIRANSGGLIVRFNSLQGFVPN-PLLSPAHWCKDPKRPIQDVT 139
Query: 250 KNKVGCSIRVCITRLDEETNDLIISEKKAWEMTY---LKEGTLLQGIVHKIFPYGAQVRI 306
K+ VG SI V + ++EE L+ SEK A T+ +K G + GIV +F YGA V +
Sbjct: 140 KDLVGSSISVKVVEVNEEERKLVFSEKDASWFTHSSLVKIGAIYDGIVGSVFHYGAFVHL 199
Query: 307 ----AGTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVKSNV-PDKIALSISDLEST 361
+ +GL+HIS +S V V D L + VKV+VV ++ +IALSI LE
Sbjct: 200 RFPDGNYHLTGLVHISEVSWDLVQDVRDFLNEGDTVKVIVVNIDMEKSRIALSIRQLEED 259
Query: 362 PGL 364
P L
Sbjct: 260 PLL 262
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,012,529
Number of extensions: 494966
Number of successful extensions: 1106
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1097
Number of HSP's successfully gapped: 4
Length of query: 438
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 334
Effective length of database: 11,605,545
Effective search space: 3876252030
Effective search space used: 3876252030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)