Os03g0315800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 30S ribosomal protein S1, chloroplast precursor (CS1).
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Os03g0315800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 30S ribosomal protein S1, chloroplast precursor (CS1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.88 | 0.361 | 13.6 | -0.435 | 0.841 | 0.885 | -0.53 | -1.45 | -0.607 | 21.3 | 25.1 | 1500 | -- | -- |
| 59.85 | 0.36 | 13.5 | -0.0264 | 0.85 | 0.75 | -0.583 | -- | -0.515 | 21 | 24.9 | 1431 | -- | -- |
| 59.88 | 0.36 | 13.6 | -0.462 | 0.84 | 0.909 | -- | -1.6 | -0.611 | 21.3 | 25.08 | 1519 | -- | -- |
| 60.83 | 0.363 | 13.5 | -0.0467 | 0.846 | 0.749 | -- | -- | -0.515 | 21.3 | 25 | 1502 | -- | -- |
| 75.34 | 0.404 | 13.5 | -0.344 | -- | 1.46 | -- | -1.85 | -0.718 | -- | 23.66 | 818 | -- | -- |
| 82.6 | 0.426 | 13.5 | 0.235 | 0.866 | -- | -0.508 | -- | -0.413 | 21.4 | -- | -- | -- | -- |
| 83.53 | 0.428 | 13.5 | 0.253 | 0.868 | -- | -- | -- | -0.413 | 21.5 | -- | -- | -- | -- |
| 78.75 | 0.413 | 13.5 | -0.0604 | -- | 1.31 | -- | -- | -0.562 | -- | 24.1 | 809 | -- | -- |
| 60.79 | 0.363 | 13.5 | -- | 0.842 | 0.745 | -- | -- | -0.504 | 21.3 | 25.1 | 1513 | -- | -- |
| 127.75 | 0.528 | 13.5 | 0.258 | -- | -- | -- | -- | -0.416 | -- | -- | -- | -- | -- |
| 85.22 | 0.432 | 13.5 | -- | 0.868 | -- | -- | -- | -0.441 | 21.5 | -- | -- | -- | -- |
| 78.84 | 0.414 | 13.5 | -- | -- | 1.3 | -- | -- | -0.556 | -- | 24.1 | 806 | -- | -- |
| 129.51 | 0.531 | 13.5 | -- | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.40 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 3 | 52.42 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 18 | 52.94 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 19 | 52.94 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 23 | 53.00 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 93 | 54.49 | temperature | 20.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 96 | 54.52 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 100 | 54.55 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 104 | 54.61 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 106 | 54.62 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 125 | 54.77 | temperature | 20.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 134 | 54.81 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 161 | 55.04 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 196 | 55.23 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 214 | 55.29 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 217 | 55.31 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 219 | 55.32 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 237 | 55.39 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 239 | 55.39 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 287 | 55.60 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 294 | 55.63 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 298 | 55.64 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 327 | 55.75 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 371 | 55.87 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 375 | 55.89 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 383 | 55.91 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 401 | 55.97 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 435 | 56.05 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 479 | 56.19 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 518 | 56.31 | temperature | 25.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 525 | 56.32 | temperature | 25.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 611 | 56.51 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 668 | 56.62 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 669 | 56.62 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 673 | 56.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 20 |
| 677 | 56.63 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 683 | 56.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 18 |
| 697 | 56.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 20 |
| 699 | 56.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 20 |
| 704 | 56.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 18 |
| 707 | 56.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 18 |
| 929 | 56.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 934 | 56.97 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 944 | 56.98 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |