Os03g0844900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA binding S1 domain containing protein.
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Os03g0844900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA binding S1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.3 | 0.365 | 12.7 | -1.29 | 0.711 | -1.07 | 0.938 | 2.23 | -0.528 | 8.69 | 23.75 | 448 | -- | -- |
| 62.28 | 0.368 | 12.8 | -1.63 | 0.759 | -0.867 | 0.707 | -- | -0.608 | 8.5 | 22.77 | 446 | -- | -- |
| 61.72 | 0.366 | 12.8 | -1.39 | 0.768 | -1.2 | -- | 2.73 | -0.667 | 8.91 | 26.75 | 408 | -- | -- |
| 63.32 | 0.371 | 12.8 | -1.65 | 0.769 | -0.932 | -- | -- | -0.696 | 8.72 | 26.03 | 422 | -- | -- |
| 82.05 | 0.422 | 12.7 | -1.11 | -- | -1.62 | -- | 2.63 | -0.483 | -- | 24.33 | 547 | -- | -- |
| 75.88 | 0.408 | 12.8 | -1.83 | 1.08 | -- | 1.01 | -- | -0.742 | 7.79 | -- | -- | -- | -- |
| 78.79 | 0.416 | 12.8 | -1.8 | 1.08 | -- | -- | -- | -0.743 | 7.76 | -- | -- | -- | -- |
| 85.63 | 0.431 | 12.8 | -1.54 | -- | -1.3 | -- | -- | -0.541 | -- | 24.18 | 566 | -- | -- |
| 84.96 | 0.429 | 12.6 | -- | 1.07 | -1.44 | -- | -- | -0.114 | 7.67 | 7.27 | 47520 | -- | -- |
| 141.73 | 0.556 | 12.8 | -1.79 | -- | -- | -- | -- | -0.728 | -- | -- | -- | -- | -- |
| 164.54 | 0.6 | 12.7 | -- | 1.07 | -- | -- | -- | -0.543 | 7.88 | -- | -- | -- | -- |
| 138.61 | 0.548 | 12.7 | -- | -- | -2.31 | -- | -- | -0.19 | -- | 15.12 | 594 | -- | -- |
| 226.29 | 0.702 | 12.8 | -- | -- | -- | -- | -- | -0.529 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.05 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 5 | 53.80 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 29 | 54.72 | radiation | 1.0 | 270 | < th | dose independent | sin | 18 | NA |
| 32 | 54.87 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 33 | 54.90 | radiation | 1.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 39 | 55.01 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 41 | 55.04 | radiation | 1.0 | 270 | > th | dose independent | sin | 18 | NA |
| 51 | 55.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 13 | 12 |
| 70 | 55.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 76 | 55.52 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 106 | 55.74 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 107 | 55.74 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 109 | 55.78 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 14 | 7 |
| 168 | 56.33 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 185 | 56.47 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 257 | 56.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 263 | 56.94 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 271 | 57.00 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 17 |
| 344 | 57.37 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 350 | 57.43 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 380 | 57.56 | temperature | 25.0 | 90 | > th | dose dependent | sin | 16 | NA |
| 401 | 57.68 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 416 | 57.74 | temperature | 25.0 | 270 | > th | dose dependent | sin | 19 | NA |
| 472 | 57.95 | temperature | 25.0 | 10 | > th | dose independent | rect. | 14 | 7 |
| 486 | 58.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 531 | 58.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 544 | 58.23 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 607 | 58.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 654 | 58.62 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 8 |
| 713 | 58.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 8 |
| 718 | 58.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 771 | 58.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 793 | 58.99 | wind | 3.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 808 | 59.01 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 14 | 7 |
| 813 | 59.03 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 831 | 59.07 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 850 | 59.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 859 | 59.13 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 883 | 59.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 888 | 59.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 896 | 59.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 903 | 59.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 904 | 59.21 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 929 | 59.26 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 949 | 59.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 954 | 59.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 969 | 59.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 16 |
| 970 | 59.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 979 | 59.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 8 |
| 981 | 59.38 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 983 | 59.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 990 | 59.40 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 991 | 59.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 992 | 59.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 16 |