Os01g0589000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os01g0589000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.62 | 0.354 | 10.5 | -0.801 | 0.858 | 1.11 | -0.733 | -0.416 | -0.644 | 23.2 | 23.25 | 137 | -- | -- |
| 56.69 | 0.351 | 10.5 | -0.734 | 0.86 | 1.07 | -0.693 | -- | -0.625 | 23.2 | 23.22 | 129 | -- | -- |
| 58.66 | 0.357 | 10.5 | -0.696 | 0.874 | 1.05 | -- | 0.14 | -0.615 | 23.1 | 23.08 | 112 | -- | -- |
| 58.63 | 0.357 | 10.5 | -0.711 | 0.882 | 1.1 | -- | -- | -0.62 | 23.2 | 23.43 | 108 | -- | -- |
| 81.21 | 0.42 | 10.5 | -0.96 | -- | 1.45 | -- | -0.514 | -0.736 | -- | 16.2 | 667 | -- | -- |
| 77.03 | 0.411 | 10.5 | -0.522 | 0.826 | -- | -0.679 | -- | -0.473 | 21.2 | -- | -- | -- | -- |
| 78.65 | 0.415 | 10.5 | -0.496 | 0.832 | -- | -- | -- | -0.472 | 21.1 | -- | -- | -- | -- |
| 81.44 | 0.42 | 10.5 | -0.863 | -- | 1.45 | -- | -- | -0.707 | -- | 15.98 | 664 | -- | -- |
| 70.79 | 0.392 | 10.5 | -- | 0.859 | 0.92 | -- | -- | -0.506 | 22.9 | 24.1 | 106 | -- | -- |
| 118.6 | 0.509 | 10.4 | -0.494 | -- | -- | -- | -- | -0.477 | -- | -- | -- | -- | -- |
| 85.13 | 0.432 | 10.4 | -- | 0.832 | -- | -- | -- | -0.417 | 21.1 | -- | -- | -- | -- |
| 98.81 | 0.463 | 10.5 | -- | -- | 0.975 | -- | -- | -0.564 | -- | 20.72 | 622 | -- | -- |
| 125.04 | 0.522 | 10.4 | -- | -- | -- | -- | -- | -0.422 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.18 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 20 |
| 2 | 52.21 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 18 |
| 13 | 54.00 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 18 |
| 14 | 54.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 20 |
| 19 | 54.53 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 35 | 55.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 38 | 55.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 74 | 55.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 77 | 56.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 138 | 56.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 140 | 56.78 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 178 | 57.11 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 217 | 57.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 224 | 57.37 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 270 | 57.60 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 298 | 57.72 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 322 | 57.78 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 384 | 57.93 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 10 |
| 388 | 57.94 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 402 | 57.98 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 21 |
| 530 | 58.31 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 537 | 58.32 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 644 | 58.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 814 | 58.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 898 | 58.85 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 927 | 58.90 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 23 |
| 934 | 58.91 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 23 |