BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0589000 Os01g0589000|AK099851
         (438 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71720.1  | chr1:26983744-26985893 FORWARD LENGTH=501          347   8e-96
AT5G30510.1  | chr5:11619262-11621223 REVERSE LENGTH=417          107   1e-23
AT3G23700.1  | chr3:8531689-8533742 REVERSE LENGTH=393             65   8e-11

>AT1G71720.1 | chr1:26983744-26985893 FORWARD LENGTH=501
          Length = 500

 Score =  347 bits (890), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 188/355 (52%), Positives = 232/355 (65%), Gaps = 4/355 (1%)

Query: 72  DEDGARSGGRYDPRPGDFAVGVVVSGTEARLDVAVGADRXXXXXXXXXXXXYRADLPAFA 131
           DE    S   YDP+PGDF VGVVVSG E +LDV +GAD             Y  +L    
Sbjct: 143 DETDRVSVEYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLL 202

Query: 132 EAAPPRXXXXXXXXXXXXXXXDRKPGERG----GGRTLVPPGTVVFAEVLGRTLSGXXXX 187
                                D +  E       GR +V  GTVVFAEVLGRTLSG    
Sbjct: 203 CDLKYDAEEFLVNGKMGIVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLL 262

Query: 188 XXXXXXXXXAWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFT 247
                    AWHR RQ+ QL+EPIEVKI EWNTGGLLTRIEGLRAF+PK EL+ ++NTFT
Sbjct: 263 SSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFT 322

Query: 248 DLKNKVGCSIRVCITRLDEETNDLIISEKKAWEMTYLKEGTLLQGIVHKIFPYGAQVRIA 307
           +LK  VG    V ITRL+E+ NDLI+SEK AWE  YL+EGTLL+G V KI PYGAQV++ 
Sbjct: 323 ELKENVGRRFLVQITRLNEDKNDLILSEKVAWEKLYLREGTLLEGTVVKILPYGAQVKLG 382

Query: 308 GTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVKSNVPDKIALSISDLESTPGLFLS 367
            ++RSGLLHISNI+R R+ SVSD+L++DE VKVLVVKS  PDKI+LSI+DLES PGLF+S
Sbjct: 383 DSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLFPDKISLSIADLESEPGLFIS 442

Query: 368 EKARVFSEAEEMAERYREQLPADSKNAKLDADLPGGTIPFDDEATLYANWKWFKF 422
           ++ +VF+EAEEMA++YRE++P  + +   D      + P   +  +YANW+WFKF
Sbjct: 443 DREKVFTEAEEMAKKYREKMPLVATSPISDRPPITSSFPQGKDEEIYANWEWFKF 497



>AT5G30510.1 | chr5:11619262-11621223 REVERSE LENGTH=417
          Length = 416

 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 9/204 (4%)

Query: 197 AWHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFELMDRINTFTDLKNKVGCS 256
           AW R RQ+   D  ++ K+   N GGL+  +EGLR F+P      +I++    +  +   
Sbjct: 176 AWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISSKAAAEELLEKE 231

Query: 257 IRVCITRLDEETNDLIISEKKAW--EMTYLKEGTLLQGIVHKIFPYGAQVRIAGTNRSGL 314
           I +    +DEE   L++S +KA       L  G+++ G+V  + PYGA + I G N  GL
Sbjct: 232 IPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGIN--GL 289

Query: 315 LHISNISRGRVLSVSDILKIDEEVKVLVVKSNVP-DKIALSISDLESTPGLFLSEKARVF 373
           LH+S IS  RV  ++ +L+  + +KV+++  +    +++LS   LE TPG  +     VF
Sbjct: 290 LHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVF 349

Query: 374 SEAEEMAERYREQLPADSKNAKLD 397
            +AEEMA+ +R+++      A+ D
Sbjct: 350 EKAEEMAQTFRQRIAQAEAMARAD 373



>AT3G23700.1 | chr3:8531689-8533742 REVERSE LENGTH=393
          Length = 392

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 19/184 (10%)

Query: 198 WHRARQVMQLDEPIEVKIYEWNTGGLLTRIEGLRAFLPKFEL---------MDRINTFTD 248
           W  A+   +  +  E ++  +N GGLL R   L  FLP  +L            I+    
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIA- 155

Query: 249 LKNKVGCSIRVCITRLDEETNDLIISEKKAWEMTYLKE---GTLLQGIVHKIFPYGAQVR 305
            K  VG  + V + + DEE   LI+SEK A    Y +    G +  G V  +  YGA + 
Sbjct: 156 -KTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIH 214

Query: 306 I----AGTNRSGLLHISNISRGRVLSVSDILKIDEEVKVLVVK-SNVPDKIALSISDLES 360
           +       + +GL+H+S +S   V  V D+L+  +EV+V+V        +I LSI  LE 
Sbjct: 215 LRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLED 274

Query: 361 TPGL 364
            P L
Sbjct: 275 DPLL 278



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,862,028
Number of extensions: 299748
Number of successful extensions: 722
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 719
Number of HSP's successfully gapped: 4
Length of query: 438
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 336
Effective length of database: 8,310,137
Effective search space: 2792206032
Effective search space used: 2792206032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)