BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0588700 Os01g0588700|AK066951
         (330 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0588700  Protein of unknown function DUF572 family protein   623   e-179
Os01g0588600  Protein of unknown function DUF572 family protein   241   4e-64
Os02g0324300  Protein of unknown function DUF572 family protein    78   1e-14

>Os01g0588700 Protein of unknown function DUF572 family protein
          Length = 330

 Score =  623 bits (1607), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 303/330 (91%), Positives = 303/330 (91%)

Query: 1   MGERKVLNKYYPPDFDPSKIPRRRQPKNQQIKVRMMLPMSIRCGTCGTYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKIPRRRQPKNQQIKVRMMLPMSIRCGTCGTYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKIPRRRQPKNQQIKVRMMLPMSIRCGTCGTYIYKGTKFNSRK 60

Query: 61  EDVEGEKYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNFEPWXXXXXXXXX 120
           EDVEGEKYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNFEPW         
Sbjct: 61  EDVEGEKYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNFEPWREEDEVADR 120

Query: 121 XXXXXXXXXMGDAMRALENRAMDSKQDMDILAALEEMRSMKSRHAGVTVDQMLEILKRSA 180
                    MGDAMRALENRAMDSKQDMDILAALEEMRSMKSRHAGVTVDQMLEILKRSA
Sbjct: 121 EKRKRDEEEMGDAMRALENRAMDSKQDMDILAALEEMRSMKSRHAGVTVDQMLEILKRSA 180

Query: 181 HDKEEKTVAELDEEDEKLIKSITFRNSQDYVKRIXXXXXXXXXLVIPGQSSSTSKMNGSS 240
           HDKEEKTVAELDEEDEKLIKSITFRNSQDYVKRI         LVIPGQSSSTSKMNGSS
Sbjct: 181 HDKEEKTVAELDEEDEKLIKSITFRNSQDYVKRIEDDDDDDEDLVIPGQSSSTSKMNGSS 240

Query: 241 QSVSNATDVLTKTSGSDNANKEGNKIWPSKMPKFIVKPKSTPTDPIKKQKTETTAGPDTG 300
           QSVSNATDVLTKTSGSDNANKEGNKIWPSKMPKFIVKPKSTPTDPIKKQKTETTAGPDTG
Sbjct: 241 QSVSNATDVLTKTSGSDNANKEGNKIWPSKMPKFIVKPKSTPTDPIKKQKTETTAGPDTG 300

Query: 301 KAPVAEENSEPAQNNVLQSLCQNYDSDESE 330
           KAPVAEENSEPAQNNVLQSLCQNYDSDESE
Sbjct: 301 KAPVAEENSEPAQNNVLQSLCQNYDSDESE 330



>Os01g0588600 Protein of unknown function DUF572 family protein
          Length = 291

 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 141/330 (42%), Positives = 186/330 (56%), Gaps = 41/330 (12%)

Query: 1   MGERKVLNKYYPPDFDPSKIPRRRQPKNQQIKVRMMLPMSIRCGTCGTYIYKGTKFNSRK 60
           M ERKV+NK+YP DFDPSKIPRRRQ K Q + VRMMLPM++RC  CG YI +GTKFNSRK
Sbjct: 1   MAERKVINKHYPDDFDPSKIPRRRQHKKQMV-VRMMLPMTVRCAACGEYIGRGTKFNSRK 59

Query: 61  EDVEGEKYLG-IQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASR-NFEPWXXXXXXX 118
           EDV GE+YLG +Q+FRFY +C++CSAEI F+TDP ++ Y +ESGA+R ++EPW       
Sbjct: 60  EDVAGERYLGAVQVFRFYIRCSRCSAEIVFRTDPASAGYALESGATRPSYEPWPAAAAEA 119

Query: 119 XXXXXXXXXXXMGDAMRALENRAMDSKQDMDILAALEEMRSMKSRHAGVTVDQMLEILKR 178
                        DAM ALE R  D++++M + AALEEMRS+KSR AGVT +Q+LE L+R
Sbjct: 120 GREERGGG-----DAMTALEGRCRDARREMGVDAALEEMRSLKSRRAGVTPEQLLESLRR 174

Query: 179 SAHDKEEKTVAELDEEDEKLIKSITFRNSQDYVKRIXXXXXXXXXLVIPGQSSSTSKMNG 238
                  + +AEL+E+DEKLI SI F N+++   R            I        + + 
Sbjct: 175 RG-----EALAELEEDDEKLISSIAFGNAKERSLR-----------RIDDGDDEDDEEDF 218

Query: 239 SSQSVSNATDVLTKTSGSDNANKEGNKIWPSKMPKFIVKPKSTPTDPIKKQKTETTAGPD 298
               ++ A    T    S  A K         +   +V  K  P     +   +    P 
Sbjct: 219 FDSCLARAAMATT----SHQAKKRPPPPPRDAVKSLVVSKKRRP-----ESMDQAAWPPS 269

Query: 299 TGKAPVAEENSEPAQNNVLQSLCQNYDSDE 328
           +GK          A N  LQ LC NYD +E
Sbjct: 270 SGKT--------TASNGALQVLCCNYDDEE 291



>Os02g0324300 Protein of unknown function DUF572 family protein
          Length = 310

 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 18/196 (9%)

Query: 8   NKYYPPDFDPSK----------IPRRRQPKNQQ--IKVRMMLPMSIRCGTCGTYIYKGTK 55
           N YYPP++ P K            R R  K  Q  + +R  +P +I CG C + I KG +
Sbjct: 11  NFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVR 70

Query: 56  FNSRKEDVEGEKYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNFEPWXXXX 115
           FN+ K+ V    Y   +I+ F  K   C  EI  +TDP+N++Y + SGA R  E +    
Sbjct: 71  FNAEKKQVGN--YYSTKIWSFTMKSPCCKQEIVIQTDPKNTEYVIISGAQRKTEDYDVED 128

Query: 116 XXXXXXXXXXXXXXMGDAMRALENRAMDSKQDMDILAALEEMRSMK-SRHAGVTVDQMLE 174
                         + D M  LE++  D K+  +    L  ++ +  SRH+    D  L 
Sbjct: 129 AETLLLPADEERDKLADPMYKLEHQEEDLKKKKEAEPVLVRLQRLSDSRHSD---DYALN 185

Query: 175 ILKRSAHDKEEKTVAE 190
              R     ++K VAE
Sbjct: 186 RALRDRLRSQKKRVAE 201



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,965,618
Number of extensions: 376270
Number of successful extensions: 1190
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1183
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 229
Effective length of database: 11,762,187
Effective search space: 2693540823
Effective search space used: 2693540823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)