BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0555100 Os01g0555100|AK111255
         (139 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0555100  Similar to TATA-binding protein associated fac...   283   4e-77
Os06g0141200  Similar to RNA-binding protein EWS                  122   1e-28
Os02g0203700  Similar to Testis expressed sequence 13A protein    120   4e-28

>Os01g0555100 Similar to TATA-binding protein associated factor 2N (RNA-binding
           protein 56) (TAFII68) (TAF(II)68)
          Length = 139

 Score =  283 bits (723), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   METKAAAMAMRKPGDWSCRSCQYVNFCKREACQRCGEAKLGVERTDYAAMGGGWEVKPGD 60
           METKAAAMAMRKPGDWSCRSCQYVNFCKREACQRCGEAKLGVERTDYAAMGGGWEVKPGD
Sbjct: 1   METKAAAMAMRKPGDWSCRSCQYVNFCKREACQRCGEAKLGVERTDYAAMGGGWEVKPGD 60

Query: 61  WCCRCCAVNNYASRGSCFKCGAAKNDSAAAVAQGWGFSVASQAGWKNGDWICPRMECNVQ 120
           WCCRCCAVNNYASRGSCFKCGAAKNDSAAAVAQGWGFSVASQAGWKNGDWICPRMECNVQ
Sbjct: 61  WCCRCCAVNNYASRGSCFKCGAAKNDSAAAVAQGWGFSVASQAGWKNGDWICPRMECNVQ 120

Query: 121 NYANRTECFRCNFPRYYVD 139
           NYANRTECFRCNFPRYYVD
Sbjct: 121 NYANRTECFRCNFPRYYVD 139



>Os06g0141200 Similar to RNA-binding protein EWS
          Length = 145

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 84/139 (60%), Gaps = 16/139 (11%)

Query: 10  MRKPGDWSCRSCQYVNFCKREACQRCGEAKLGVERTDYAAMGG---GWEVKPGDWCCRCC 66
            RKPGDW+C+SCQ++NF +R+ CQRC   +  +   D    GG     +++PGDW C C 
Sbjct: 4   QRKPGDWNCKSCQHLNFSRRDYCQRCHTPRQDLPLGDGYVPGGVLTSLDIRPGDWYCNC- 62

Query: 67  AVNNYASRGSCFKCGAAKNDSAAAVAQGWGF----------SVASQAGWKNGDWICPRME 116
             +N+ASR SCFKCGA   D  A   QG G           S A +AGWK GDWIC R  
Sbjct: 63  GYHNFASRASCFKCGAIVKDLPAG--QGGGVANGDFARALDSSAVRAGWKAGDWICTRPG 120

Query: 117 CNVQNYANRTECFRCNFPR 135
           CNV N+A+R EC+RCN PR
Sbjct: 121 CNVHNFASRIECYRCNAPR 139



>Os02g0203700 Similar to Testis expressed sequence 13A protein
          Length = 166

 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 93/159 (58%), Gaps = 35/159 (22%)

Query: 11  RKPGDWSCRSCQYVNFCKREACQRCGEAKLGVERT-----DYA------------AMGGG 53
           RKPGDW CR+CQ++NF +R+ CQRCGE +   +R      DYA              G G
Sbjct: 3   RKPGDWDCRACQHLNFSRRDLCQRCGEPRGAADRGSGGGGDYANFGGRGGSSFGGGFGTG 62

Query: 54  WEVKPGDWCCRCCAVNNYASRGSCFKCGAAKNDSAA-------------AVAQGWGFSV- 99
            +V+PGDW C C   +N+ASR SCFKC A K+D+A              + ++G+GF   
Sbjct: 63  SDVRPGDWYCNC-GAHNFASRSSCFKCAAFKDDAAVNSGGAGAFDGGDMSRSRGYGFGSG 121

Query: 100 ---ASQAGWKNGDWICPRMECNVQNYANRTECFRCNFPR 135
              AS+ GWK+GDWIC R  CN  N+A+R ECFRCN PR
Sbjct: 122 AVRASRPGWKSGDWICTRSGCNEHNFASRMECFRCNAPR 160



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.134    0.489 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,377,736
Number of extensions: 210555
Number of successful extensions: 883
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 3
Length of query: 139
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 49
Effective length of database: 12,336,541
Effective search space: 604490509
Effective search space used: 604490509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)