BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0546900 Os01g0546900|AK073801
         (395 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0546900  Transcription factor jumonji/aspartyl beta-hyd...   794   0.0  
Os11g0572800  Cyclin-like F-box domain containing protein          69   6e-12
Os03g0389900  Cyclin-like F-box domain containing protein          68   1e-11

>Os01g0546900 Transcription factor jumonji/aspartyl beta-hydroxylase domain
           containing protein
          Length = 395

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/395 (96%), Positives = 381/395 (96%)

Query: 1   MSMREFVDHWXXXXXXXXXXXXXXYLKDWHFVKEYPGYVAYTTPTFFADDWLNMYLDSHP 60
           MSMREFVDHW              YLKDWHFVKEYPGYVAYTTPTFFADDWLNMYLDSHP
Sbjct: 1   MSMREFVDHWAASSSNGDSDGSLLYLKDWHFVKEYPGYVAYTTPTFFADDWLNMYLDSHP 60

Query: 61  IHRDSDIANHTNEINCADYRFVYMGPKGTWTPLHADVFRSYSWSANVCGRKLWLFLPPSQ 120
           IHRDSDIANHTNEINCADYRFVYMGPKGTWTPLHADVFRSYSWSANVCGRKLWLFLPPSQ
Sbjct: 61  IHRDSDIANHTNEINCADYRFVYMGPKGTWTPLHADVFRSYSWSANVCGRKLWLFLPPSQ 120

Query: 121 SHFVFDRNLRSSVYNINDDVSEKQFPEFNNTKWLECTQEQNEIIFVPSGWYHQVHNLEDT 180
           SHFVFDRNLRSSVYNINDDVSEKQFPEFNNTKWLECTQEQNEIIFVPSGWYHQVHNLEDT
Sbjct: 121 SHFVFDRNLRSSVYNINDDVSEKQFPEFNNTKWLECTQEQNEIIFVPSGWYHQVHNLEDT 180

Query: 181 ISINHNWFNGYNLHWVWNLLHEDYKVAKDYIEDIRDICDDFEGLCQRNLAANTGMNFYDF 240
           ISINHNWFNGYNLHWVWNLLHEDYKVAKDYIEDIRDICDDFEGLCQRNLAANTGMNFYDF
Sbjct: 181 ISINHNWFNGYNLHWVWNLLHEDYKVAKDYIEDIRDICDDFEGLCQRNLAANTGMNFYDF 240

Query: 241 FVFITRFALANIVELYHIQNPKDTDFISAETANHFVYNLMSIRDVASKMVSTEAFNTENI 300
           FVFITRFALANIVELYHIQNPKDTDFISAETANHFVYNLMSIRDVASKMVSTEAFNTENI
Sbjct: 241 FVFITRFALANIVELYHIQNPKDTDFISAETANHFVYNLMSIRDVASKMVSTEAFNTENI 300

Query: 301 CNISEQNRSAFSDIIKILEEESFRRLLVALSKAYNYIDRGQKDCLKMKDSSQKGCLSVTC 360
           CNISEQNRSAFSDIIKILEEESFRRLLVALSKAYNYIDRGQKDCLKMKDSSQKGCLSVTC
Sbjct: 301 CNISEQNRSAFSDIIKILEEESFRRLLVALSKAYNYIDRGQKDCLKMKDSSQKGCLSVTC 360

Query: 361 LKPDCNVVGDIISFMREIHGPMDLVTLIDSALSDR 395
           LKPDCNVVGDIISFMREIHGPMDLVTLIDSALSDR
Sbjct: 361 LKPDCNVVGDIISFMREIHGPMDLVTLIDSALSDR 395



>Os11g0572800 Cyclin-like F-box domain containing protein
          Length = 521

 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 31/179 (17%)

Query: 25  YLKDWHFVKEYPGYVA-YTTPTFFADDWLNMYLDSHPIHRDSDIANHTNEINCADYRFVY 83
           YL D  F ++ P     Y  P +F +D   +  +  P                 D+R+V 
Sbjct: 287 YLFDAKFTEKVPEMGRDYEVPAYFREDLFGVLGEERP-----------------DHRWVI 329

Query: 84  MGPKGTWTPLHADVFRSYSWSANVCGRKLWLFLPPSQSHFVFDRNLRSSV--YNINDDVS 141
           +GP G+ +  H D   + +W+A + G K W+  PP     V    +  S     +   VS
Sbjct: 330 IGPAGSGSSFHVDPNSTSAWNAVIKGAKKWVMFPPE----VVPPGVHPSADGAEVTSPVS 385

Query: 142 EKQ-FPEFNNT------KWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNL 193
             + F  F         + +EC     E++FVP+GW+H V NLE++I+I  N+ +  NL
Sbjct: 386 IMEWFMNFYGACKTWEKRPVECICRAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNL 444



>Os03g0389900 Cyclin-like F-box domain containing protein
          Length = 953

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 40/188 (21%)

Query: 25  YLKDWHFVKEYPGYVA-YTTPTFFADDWLN-MYLDSHPIHRDSDIANHTNEINCADYRFV 82
           Y+ D  F +  P  +  Y+ P  F +D+   M  D  P                  +R++
Sbjct: 206 YIFDDKFGESAPTLLEDYSVPHLFQEDFFEIMDYDQRPA-----------------FRWL 248

Query: 83  YMGPKGTWTPLHADVFRSYSWSANVCGRKLWLFLPPSQSHFVFDRNLRSSVYNINDDVSE 142
            +GP+ +    H D   + +W+  +CGRK W   PP        R       +++D+  +
Sbjct: 249 IIGPERSGASWHVDPGLTSAWNTLLCGRKRWAMYPPG-------RVPGGVTVHVSDEDGD 301

Query: 143 KQFPEFNNTKW--------------LECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWF 188
                  + +W              LECTQ   E IFVPSGW+H V NL+ TI++  N+ 
Sbjct: 302 VDIETPTSLQWWLDIYPNLAEHEKPLECTQLPGETIFVPSGWWHCVLNLDMTIAVTQNFV 361

Query: 189 NGYNLHWV 196
           N  N   V
Sbjct: 362 NQSNFKHV 369



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,975,688
Number of extensions: 526175
Number of successful extensions: 982
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 981
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)