Os03g0389900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os03g0389900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.69 | 0.198 | 11.3 | -0.386 | 0.366 | -0.789 | 0.161 | 0.103 | -0.102 | 20.1 | -4.233 | 532 | -- | -- |
| 17.7 | 0.196 | 11.3 | -0.404 | 0.366 | -0.794 | 0.192 | -- | -0.106 | 19.9 | 0.06183 | 498 | -- | -- |
| 17.76 | 0.196 | 11.3 | -0.37 | 0.364 | -0.786 | -- | 0.237 | -0.097 | 20.1 | -3.847 | 528 | -- | -- |
| 17.8 | 0.196 | 11.3 | -0.41 | 0.364 | -0.78 | -- | -- | -0.108 | 20.1 | 0.6696 | 528 | -- | -- |
| 21.17 | 0.214 | 11.3 | -0.408 | -- | -0.569 | -- | -0.0193 | -0.12 | -- | 2.105 | 1509 | -- | -- |
| 24.86 | 0.234 | 11.3 | -0.589 | 0.178 | -- | 0.0387 | -- | -0.224 | 21.5 | -- | -- | -- | -- |
| 24.86 | 0.233 | 11.3 | -0.59 | 0.178 | -- | -- | -- | -0.224 | 21.5 | -- | -- | -- | -- |
| 21.17 | 0.214 | 11.3 | -0.406 | -- | -0.569 | -- | -- | -0.119 | -- | 1.817 | 1506 | -- | -- |
| 21.69 | 0.217 | 11.3 | -- | 0.413 | -0.962 | -- | -- | -0.0389 | 20.2 | 6.397 | 588 | -- | -- |
| 26.73 | 0.242 | 11.3 | -0.589 | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
| 34.04 | 0.273 | 11.3 | -- | 0.178 | -- | -- | -- | -0.159 | 21.3 | -- | -- | -- | -- |
| 23.02 | 0.223 | 11.3 | -- | -- | -0.622 | -- | -- | 0.0175 | -- | -2.569 | 34718 | -- | -- |
| 35.88 | 0.28 | 11.3 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 3 | 17.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 16 | 17.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 54 | 17.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 56 | 17.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 78 | 17.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 95 | 17.72 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 104 | 17.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 120 | 17.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 241 | 17.99 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 257 | 18.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 407 | 18.25 | temperature | 10 | 270 | > th | dose dependent | sin | 21 | NA |
| 415 | 18.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 463 | 18.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 23 |
| 471 | 18.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 19 |
| 616 | 18.53 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 626 | 18.54 | temperature | 30 | 270 | < th | dose dependent | sin | 20 | NA |
| 648 | 18.56 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 940 | 18.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 942 | 18.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 943 | 18.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 8 |
| 944 | 18.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 14 |
| 948 | 18.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 15 |
| 956 | 18.90 | temperature | 10 | 1440 | > th | dose dependent | sin | 8 | NA |
| 974 | 18.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 15 |
| 990 | 18.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 992 | 18.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 4 |