BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0389900 Os03g0389900|AK065339
(953 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78280.1 | chr1:29452823-29457118 FORWARD LENGTH=944 1058 0.0
AT5G06550.1 | chr5:2001246-2003068 REVERSE LENGTH=503 228 1e-59
AT5G63080.1 | chr5:25300026-25302321 REVERSE LENGTH=463 86 7e-17
AT5G19840.2 | chr5:6705372-6709063 FORWARD LENGTH=550 54 4e-07
>AT1G78280.1 | chr1:29452823-29457118 FORWARD LENGTH=944
Length = 943
Score = 1058 bits (2735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/953 (55%), Positives = 667/953 (69%), Gaps = 34/953 (3%)
Query: 7 RMEAALGCLAALPDEVLCAVVDLLPPTDVGRLACVSSVMYILCNEEPLWMSKCLS-VGGL 65
R ALG L+ LPDE +C +++ L P D+ LACVSSVMYILCNEEPLWMS CL G
Sbjct: 9 RRPDALGSLSVLPDETICVLLEYLAPRDIAHLACVSSVMYILCNEEPLWMSLCLRRAKGP 68
Query: 66 LVYRGSWKKTALSRLNLCSENDEIYQKPRHFDGFNSMHLYRRWYRCFTNLSSFSFDNGHV 125
L Y+GSWKKT L + END Y+K HFDGF S++LY+R+YRC T+L FSFDNG+V
Sbjct: 69 LEYKGSWKKTTLHLEGVTQEND-AYRKCFHFDGFMSLYLYKRFYRCNTSLDGFSFDNGNV 127
Query: 126 ERKDDLSLDQFRAQYDGKCPVLLTKLAETWPARTKWTAQQLTHDYGEVPFRISQRSPQKI 185
ER+ ++SLD+F +YD K PVLL+ LA++WPA WT QL+ YGEVPFRISQRSP KI
Sbjct: 128 ERRRNISLDEFSKEYDAKKPVLLSGLADSWPASNTWTIDQLSEKYGEVPFRISQRSPNKI 187
Query: 186 KMKLKDYVFYMELQHDEDPLYIFDDKFGESAPTLLEDYSVPHLFQEDFFEIMDYDQRPAF 245
MK KDY+ YM+ Q DEDPLY+FDDKFGE+AP LL+DYSVPHLFQED+FEI+D + RP +
Sbjct: 188 SMKFKDYIAYMKTQRDEDPLYVFDDKFGEAAPELLKDYSVPHLFQEDWFEILDKESRPPY 247
Query: 246 RWLIIGPERSGASWHVDPGLTSAWNTLLCGRKRWAMYPPGRVPGGVTVHVSDEDGDVDIE 305
RWLI+GPERSGASWHVDP LTSAWNTLLCGRKRWA+YPPG+VP GVTVHV+++DGDV I+
Sbjct: 248 RWLIVGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEDDGDVSID 307
Query: 306 TPTSLQWWLDIYPNLAEHEKPLECTQLPGETIFVPSGWWHCVLNLDMTIAVTQNFVNQSN 365
TP+SLQWWLD YP LA+ +KP+ECT LPGETI+VPSGWWHC+LNL+ T+AVTQNFVN+ N
Sbjct: 308 TPSSLQWWLDYYPLLADEDKPIECTLLPGETIYVPSGWWHCILNLEPTVAVTQNFVNKEN 367
Query: 366 FKHVCLDMAPGYCHKGVCRAGLLAAPDKSIRDIENLP--SITSRLNHSDMACKEKRLKSS 423
F VCLDMAPGY HKGVCRAGLLA D++ D+E + L++SD+ KEKR + +
Sbjct: 368 FGFVCLDMAPGYHHKGVCRAGLLALDDENSEDLEEETHDEEDNTLSYSDLTRKEKRTRMN 427
Query: 424 EPIRTSNNANQCSAFEFSDVHENLGDQVFSYDIDFLSQFLEKEKDHYSSVWSPTNSIGQR 483
T N + N+ FSYDIDFL+ FL+KE+DHY+ WS NS+GQR
Sbjct: 428 GGGETENREEDVNGVS---KRYNMWKNGFSYDIDFLASFLDKERDHYNFPWSMGNSVGQR 484
Query: 484 EAREWLRRLWVLKPELRELIWKGACLAINVDKWYSCLEEISACHSLPPPSEDEKLPVGTG 543
E R WL +LWVLKPE+RELIWKGAC+A+N +KW CLEE+ H+LP +EDEKLPVGTG
Sbjct: 485 EMRAWLSKLWVLKPEMRELIWKGACIALNAEKWLRCLEEVCTFHNLPLVTEDEKLPVGTG 544
Query: 544 SNPVFIVSGNVIKIYAEGGLGYSIHGLGTELEFYDLLQKLGSPLINHVPEIIASGFLVYL 603
SNPV+++S IK++ EGGL S++GLGTELEFYD+L + SPL H+PE++ASG L +
Sbjct: 545 SNPVYLLSDYAIKLFVEGGLEQSMYGLGTELEFYDILGRADSPLKTHIPEVLASGILFFE 604
Query: 604 DGVYKTVPWDGNGIPDVLAKYYSLEVSYA-NGSFPLGLWSKQLFGLSNSTD-APD----- 656
G YK VPWDG IPD+++ + N FP G+W+K L N APD
Sbjct: 605 KGSYKVVPWDGKRIPDIISSSSFDFDASMLNSEFPFGIWNKTLREHKNQGKPAPDSFGSL 664
Query: 657 -RPICPYMVTRKCKGDIFARIRDKLTKTDVLNLASSLGVQMRNIHQLPLPHVEHISKSGN 715
+ PY++T++CKG IFA++RD LT D NLA LG Q+RN+H LP P V
Sbjct: 665 SSHVWPYIITKRCKGKIFAQLRDDLTWNDAQNLAFFLGQQLRNLHLLPYPPVTRPE---- 720
Query: 716 EDIKAKENSISDVTHVPPEWKQVVSTLDRRKKSIKKHLSNWGGSIPQVLIEKAEEYLPDD 775
N++ + ++P EWK V L ++KK + L NWG IP+ L+ K +EY+PDD
Sbjct: 721 ---LLNVNAVHEELNIPAEWKVFVDALCQKKKDVTSRLENWGNPIPRALMTKIDEYIPDD 777
Query: 776 --IRFLIKFVKDDDGDSVYVVPSWIHSDIMDDNILIEGTTEPGTSTDCIAVEDLNKMDAI 833
+ L F + + GD + +WIHSD+MDDNI +E + N
Sbjct: 778 FFVDLLHVFKETNGGDEIKPC-TWIHSDVMDDNIHMEPYADDSVDGQH------NSWRPS 830
Query: 834 HIIDFSDLSIGDPLCDLIPLHLDVFRGDIDLLRQFLRSYQLPFLRAESNKDIYKSIQNS- 892
HI+DFSDL+IGDP+CDLIP++LDVFRGD DLL++ L +Y LP +R+ S+++ +S
Sbjct: 831 HILDFSDLTIGDPICDLIPIYLDVFRGDADLLKKLLENYGLPLIRSRSSENGTTKTADST 890
Query: 893 --KFSRASYRAMCYCILHEDNVLGAIFSLWKDLGTATSWEDVEHLVWGELNQY 943
K SYR MCYCILHE+NVLG+IFS+W +L TA SWE VE VW LN Y
Sbjct: 891 RKKVLSPSYRTMCYCILHEENVLGSIFSIWDELRTAESWEQVEQTVWSLLNTY 943
>AT5G06550.1 | chr5:2001246-2003068 REVERSE LENGTH=503
Length = 502
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 203/364 (55%), Gaps = 14/364 (3%)
Query: 10 AALGCLAALPDEVLCAVVDLLPPTDVGRLACVSSVMYILCNEEPLWMSKCLS-VGGLLVY 68
LG L L DE++ ++ LL +G LA V+ YI N EPLW + L + G ++
Sbjct: 78 TGLGNLQILSDELVLDILGLLGANHLGVLATVTKSFYIFANHEPLWRNLVLEELKGDFLF 137
Query: 69 RGSWKKTALSRLNLCSENDEIYQKPRHFDGFNSMHLYRRWYRCFTNLSSFSFDNGHVERK 128
GSW+ T ++ + + + F S +L++ W + ++ R
Sbjct: 138 NGSWRSTYVAAYHPKFKFAGDGESNLKIIDFYSDYLFQSWLCANLEMKPKWLRRDNITRV 197
Query: 129 DDLSLDQFRAQYDG-KCPVLLTKLAETWPARTKWTAQQLTHDYGEVPFRISQRSPQKIKM 187
+S++ F +++ PVLL + WPA KW+ LT G+V F + ++M
Sbjct: 198 RGISVEDFITKFEEPNKPVLLEGCLDGWPAIEKWSRDYLTKVVGDVEFAVGP-----VEM 252
Query: 188 KLKDYVFYMELQHDEDPLYIFDDKFGESAPTLLEDYSVPHLFQEDFFEIMDYDQRPAFRW 247
KL+ Y Y + +E PLY+FD KF E P L +Y VP F+ED F ++ ++RP +RW
Sbjct: 253 KLEKYFRYSDGAREERPLYLFDPKFAEKVPVLDSEYDVPVYFREDLFGVLG-NERPDYRW 311
Query: 248 LIIGPERSGASWHVDPGLTSAWNTLLCGRKRWAMYPPGRVPGGVTVHVSDEDGDVDIETP 307
+IIGP SG+S+H+DP TSAWN ++ G K+W ++PP VP G VH S + +V P
Sbjct: 312 IIIGPAGSGSSFHIDPNSTSAWNAVITGSKKWVLFPPDVVPPG--VHPSPDGAEV--ACP 367
Query: 308 TS-LQWWLDIYPNLAEHE-KPLECTQLPGETIFVPSGWWHCVLNLDMTIAVTQNFVNQSN 365
S ++W+++ Y + + E KP+EC GE +FVP+GWWH V+NL+ +IA+TQN+ ++SN
Sbjct: 368 VSIIEWFMNFYDDTKDWEKKPIECICKAGEVMFVPNGWWHLVINLEESIAITQNYASRSN 427
Query: 366 FKHV 369
+V
Sbjct: 428 LLNV 431
>AT5G63080.1 | chr5:25300026-25302321 REVERSE LENGTH=463
Length = 462
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 123 GHVERKD--DLSLDQFRAQYDGKC-PVLLTKLAETWPARTKWTAQQ--------LTHDYG 171
G +ER + +LS F +Y K PV+++ L E W AR W ++ TH +G
Sbjct: 7 GQIERINGKELSYGDFAERYLAKNQPVVISDLTEDWRAREDWVSENGNPNLHVFATH-FG 65
Query: 172 EVPFRISQ------RSPQKIKMKLKDYV--FYMELQHDEDPLYIFDDKFGESAPTLLEDY 223
+ +++ ++++M + ++V + + +E LY+ D F + P Y
Sbjct: 66 KSRVQVADCDTREFTDQKRLEMSVTEFVEQWTNKDSIEESVLYLKDWHFVKEYPDYTA-Y 124
Query: 224 SVPHLFQEDFFEI--------------MDYDQRPA--FRWLIIGPERSGASWHVDPGLTS 267
P LF +D+ + YDQ +R++ +G + S H D +
Sbjct: 125 QTPPLFSDDWLNVYLDNYQMHEDRDSFQKYDQISCSDYRFVYMGGKGSWTPLHADVFRSY 184
Query: 268 AWNTLLCGRKRWAMYPPGRVPGGVTVHVSDEDGDVDIETPTSLQWWLDIYPNLAEHEKP- 326
+W+ +CG+KRW PP P V+ V DI+ + E + P
Sbjct: 185 SWSANVCGKKRWLFLPP---PQSHLVYDRYMKNCV-----------YDIFEEVNETKFPG 230
Query: 327 ------LECTQLPGETIFVPSGWWHCVLNLDMTIAVTQNFVNQSNFKHV 369
LEC Q PGE IFVPSGW H V NL+ TI++ N++N N V
Sbjct: 231 FKKTTWLECIQEPGEIIFVPSGWHHQVYNLEDTISINHNWLNAYNLSWV 279
>AT5G19840.2 | chr5:6705372-6709063 FORWARD LENGTH=550
Length = 549
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Query: 247 WLIIGPERSGASWHVDPGLTSAWNTLLC---GRKRWAMYPPGRVPGGVTVHVSDEDGD-- 301
W+ RS S H DP + LLC GRK+ ++PP P + + E +
Sbjct: 173 WMNSAEARS--STHYDPH-----HNLLCVVSGRKKVVLWPPSASPSLYPMPIYGEASNHS 225
Query: 302 -VDIETPTSLQWWLDIYPNLAEH--EKPLECTQLPGETIFVPSGWWHCVLNLDMTIAVTQ 358
V +E P L YP AEH ++ E T G+ +F+P GW+H V + ++T+AV
Sbjct: 226 SVGLENPN-----LSDYPR-AEHSLKQSQEITLNAGDAVFIPEGWFHQVDSDELTVAV-- 277
Query: 359 NFVNQSNFKHVCLDMAPGYCHKGVCRAGLLAAPDKS 394
NF QSN+ + Y + + R+ L++ P +
Sbjct: 278 NFWWQSNYMSNMPEHMDSYYLRRITRSLLVSKPSST 313
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 23,864,264
Number of extensions: 1131304
Number of successful extensions: 2681
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2669
Number of HSP's successfully gapped: 6
Length of query: 953
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 845
Effective length of database: 8,145,641
Effective search space: 6883066645
Effective search space used: 6883066645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)