Os01g0546900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.
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Os01g0546900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.22 | 0.241 | 8.46 | 0.33 | 0.33 | 0.361 | -0.354 | 1.28 | 0.537 | 1.52 | 0.01369 | 5486 | -- | -- |
| 27.27 | 0.243 | 8.48 | 0.331 | 0.33 | 0.567 | -0.382 | -- | 0.55 | 1.56 | 0.3477 | 5380 | -- | -- |
| 26.71 | 0.241 | 8.46 | 0.342 | 0.33 | 0.354 | -- | 1.28 | 0.538 | 1.62 | 0.005541 | 5369 | -- | -- |
| 27.81 | 0.246 | 8.48 | 0.345 | 0.33 | 0.557 | -- | -- | 0.552 | 1.65 | 0.3441 | 5380 | -- | -- |
| 33.31 | 0.269 | 8.45 | 0.358 | -- | 0.321 | -- | 1.42 | 0.542 | -- | 0.1311 | 5293 | -- | -- |
| 33.81 | 0.273 | 8.49 | 0.507 | 0.338 | -- | -0.275 | -- | 0.49 | 1.58 | -- | -- | -- | -- |
| 34.11 | 0.273 | 8.49 | 0.516 | 0.339 | -- | -- | -- | 0.492 | 1.68 | -- | -- | -- | -- |
| 32.33 | 0.265 | 8.47 | 0.293 | -- | 0.607 | -- | -- | 0.559 | -- | 0.5 | 16843 | -- | -- |
| 25.98 | 0.237 | 8.48 | -- | 0.363 | 0.735 | -- | -- | 0.539 | 1.8 | 0.5001 | 20431 | -- | -- |
| 41.11 | 0.3 | 8.49 | 0.53 | -- | -- | -- | -- | 0.499 | -- | -- | -- | -- | -- |
| 41.13 | 0.3 | 8.51 | -- | 0.348 | -- | -- | -- | 0.434 | 1.73 | -- | -- | -- | -- |
| 32.88 | 0.267 | 8.48 | -- | -- | 0.693 | -- | -- | 0.554 | -- | 0.973 | 23885 | -- | -- |
| 48.52 | 0.325 | 8.5 | -- | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 2 | 24.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 3 | 24.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 4 | 24.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 5 | 24.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 8 | 24.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 26 | 24.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 37 | 24.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 43 | 24.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 54 | 24.60 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 19 | NA |
| 65 | 24.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 6 |
| 180 | 24.81 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 20 | NA |
| 181 | 24.81 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 20 | NA |
| 183 | 24.81 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 20 | NA |
| 530 | 25.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 576 | 25.41 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 582 | 25.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 583 | 25.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 625 | 25.49 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 674 | 25.62 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 731 | 25.80 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 766 | 25.94 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 793 | 25.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 805 | 25.99 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 809 | 26.01 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 810 | 26.01 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 814 | 26.02 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 820 | 26.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 822 | 26.04 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 832 | 26.05 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 834 | 26.05 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 841 | 26.06 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 848 | 26.08 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 856 | 26.10 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 861 | 26.12 | humidity | 60.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 863 | 26.12 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 879 | 26.14 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 908 | 26.18 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 914 | 26.20 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 948 | 26.22 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 976 | 26.26 | humidity | 60.0 | 14400 | < th | dose independent | sin | 12 | NA |