BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0546900 Os01g0546900|AK073801
(395 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63080.1 | chr5:25300026-25302321 REVERSE LENGTH=463 380 e-106
AT1G78280.1 | chr1:29452823-29457118 FORWARD LENGTH=944 70 2e-12
AT5G06550.1 | chr5:2001246-2003068 REVERSE LENGTH=503 69 3e-12
AT3G20810.2 | chr3:7275814-7278144 FORWARD LENGTH=430 57 1e-08
>AT5G63080.1 | chr5:25300026-25302321 REVERSE LENGTH=463
Length = 462
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/391 (49%), Positives = 251/391 (64%), Gaps = 29/391 (7%)
Query: 1 MSMREFVDHWXXXXXXXXXXXXXXYLKDWHFVKEYPGYVAYTTPTFFADDWLNMYLDSHP 60
MS+ EFV+ W YLKDWHFVKEYP Y AY TP F+DDWLN+YLD++
Sbjct: 87 MSVTEFVEQWTNKDSIEESVL---YLKDWHFVKEYPDYTAYQTPPLFSDDWLNVYLDNYQ 143
Query: 61 IHRDSDIANHTNEINCADYRFVYMGPKGTWTPLHADVFRSYSWSANVCGRKLWLFLPPSQ 120
+H D D ++I+C+DYRFVYMG KG+WTPLHADVFRSYSWSANVCG+K WLFLPP Q
Sbjct: 144 MHEDRDSFQKYDQISCSDYRFVYMGGKGSWTPLHADVFRSYSWSANVCGKKRWLFLPPPQ 203
Query: 121 SHFVFDRNLRSSVYNINDDVSEKQFPEFNNTKWLECTQEQNEIIFVPSGWYHQVHNLEDT 180
SH V+DR +++ VY+I ++V+E +FP F T WLEC QE EIIFVPSGW+HQV+NLEDT
Sbjct: 204 SHLVYDRYMKNCVYDIFEEVNETKFPGFKKTTWLECIQEPGEIIFVPSGWHHQVYNLEDT 263
Query: 181 ISINHNWFNGYNLHWVWNLLHEDYKVAKDYIEDIRDICDDFEGLCQRNLAANTGMNFYDF 240
ISINHNW N YNL WVW+LL +DYK ++ IEDIRDICDDFE +CQRNLAANTGMN DF
Sbjct: 264 ISINHNWLNAYNLSWVWDLLWKDYKDTEESIEDIRDICDDFEAICQRNLAANTGMNLNDF 323
Query: 241 FVFITRFALANIVELYHIQNP-KDTDFISAETANHFVYNLMSIRDVASKMVSTEAFNTEN 299
F+F++RF+L N+V L + K+ + S A + + NL +I V KM+S E
Sbjct: 324 FLFMSRFSLGNMVLLQSYSDKHKNLNSCSLAMAQNLLMNLSTILKVMMKMISAGGVTAEE 383
Query: 300 ICNISEQNRSAFSDIIKILEEESFRRLLVALSKAYNYIDRGQKD-CLKMKDSSQKGCLSV 358
+ + D+ + LE+ F R + + + Y I ++D L K+ QK
Sbjct: 384 V----------YLDLRETLEDPQFLRFVRDMGRTYARIHMEEEDQFLSSKELLQK----- 428
Query: 359 TCLKPDCNVVGDIISFMREIHGPMDLVTLID 389
+ + +I P DLV +I+
Sbjct: 429 ---------LSGLAGPNMQICSPKDLVEMIN 450
>AT1G78280.1 | chr1:29452823-29457118 FORWARD LENGTH=944
Length = 943
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 25/164 (15%)
Query: 41 YTTPTFFADDWLNMY-LDSHPIHRDSDIANHTNEINCADYRFVYMGPKGTWTPLHADVFR 99
Y+ P F +DW + +S P YR++ +GP+ + H D
Sbjct: 225 YSVPHLFQEDWFEILDKESRP-----------------PYRWLIVGPERSGASWHVDPAL 267
Query: 100 SYSWSANVCGRKLWLFLPPSQSHFVFDRNLRSSVYNINDDVSEKQ------FPEF-NNTK 152
+ +W+ +CGRK W PP + ++ +++ D +P + K
Sbjct: 268 TSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEDDGDVSIDTPSSLQWWLDYYPLLADEDK 327
Query: 153 WLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLHWV 196
+ECT E I+VPSGW+H + NLE T+++ N+ N N +V
Sbjct: 328 PIECTLLPGETIYVPSGWWHCILNLEPTVAVTQNFVNKENFGFV 371
>AT5G06550.1 | chr5:2001246-2003068 REVERSE LENGTH=503
Length = 502
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 35/181 (19%)
Query: 25 YLKDWHFVKEYPGY-VAYTTPTFFADDWLNMYLDSHPIHRDSDIANHTNEINCADYRFVY 83
YL D F ++ P Y P +F +D + + P DYR++
Sbjct: 271 YLFDPKFAEKVPVLDSEYDVPVYFREDLFGVLGNERP-----------------DYRWII 313
Query: 84 MGPKGTWTPLHADVFRSYSWSANVCGRKLWLFLPPS-----------QSHFVFDRNLRSS 132
+GP G+ + H D + +W+A + G K W+ PP + ++
Sbjct: 314 IGPAGSGSSFHIDPNSTSAWNAVITGSKKWVLFPPDVVPPGVHPSPDGAEVACPVSIIEW 373
Query: 133 VYNINDDVSEKQFPEFNNTKWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYN 192
N DD + + K +EC + E++FVP+GW+H V NLE++I+I N+ + N
Sbjct: 374 FMNFYDDTKDWE------KKPIECICKAGEVMFVPNGWWHLVINLEESIAITQNYASRSN 427
Query: 193 L 193
L
Sbjct: 428 L 428
>AT3G20810.2 | chr3:7275814-7278144 FORWARD LENGTH=430
Length = 429
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 19/149 (12%)
Query: 55 YLDSHPIHRDSDIANHTNEINCADYRFV----------YMGPKGTWTPLHADVFRSYSWS 104
YL HP+ I ++I DY FV + GP GT TPLH D ++
Sbjct: 279 YLAQHPLF--DQINELRDDICIPDYCFVGGGELQSLNAWFGPAGTVTPLHHDPH--HNIL 334
Query: 105 ANVCGRKLWLFLPPS---QSHFVFDRNLRSSVYNIN-DDVSEKQFPEFNNTKWLECTQEQ 160
A V G+K ++ L PS + + + + ++ D++ E +FP+ ++++C E+
Sbjct: 335 AQVVGKK-YIRLYPSFLQDELYPYSETMLCNSSQVDLDNIDETEFPKAMELEFMDCILEE 393
Query: 161 NEIIFVPSGWYHQVHNLEDTISINHNWFN 189
E++++P W+H V +L ++S++ W N
Sbjct: 394 GEMLYIPPKWWHYVRSLTMSLSVSFWWSN 422
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,963,616
Number of extensions: 387481
Number of successful extensions: 866
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 863
Number of HSP's successfully gapped: 4
Length of query: 395
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,337,553
Effective search space: 2451240582
Effective search space used: 2451240582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)