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Os11g0572800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.66 (0.0437) R2 : 0.314
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.63 (0.125) R2dC : 0.326 R2C : 0.0702
β3 : -1.04 (0.091) R2dE : 0.244 R2E : -0.0116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0192 (0.0921) R2dN8 : -0.000127 R2N8 : -0.000797
σ : 0.821
deviance : 310.45
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C
peak time of C : 15.9
E
wheather : radiation
threshold : 40.9
memory length : 35
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.03
open length of G : 14.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
287.95 0.797 7.66 0.621 1.64 -1.04 2.11 -0.282 0.038 16 40.97 36 5.03 14.3
288.35 0.791 7.66 0.633 1.64 -1.03 1.93 -- 0.0407 16 41.06 35 5.03 14.3
298.29 0.804 7.66 0.664 1.64 -1.03 -- 0.34 0.0522 16 40.98 35 5.02 14.3
299.04 0.805 7.66 0.655 1.65 -1.03 -- -- 0.051 16 40.98 35 5.02 14.3
395.09 0.926 7.67 0.85 -- -0.734 -- 0.984 0.136 -- 19.67 80 4.12 14.6
349.67 0.877 7.68 0.658 1.28 -- 1.64 -- -0.00377 18 -- -- -- --
355.96 0.884 7.68 0.641 1.29 -- -- -- 0.00147 18.2 -- -- -- --
350.61 0.872 7.55 1.12 -- -1.39 -- -- 0.258 -- 9.11 199 2.65 14.1
310.45 0.821 7.66 -- 1.63 -1.04 -- -- 0.0192 15.9 40.9 35 5.03 14.2
441.94 0.982 7.66 0.606 -- -- -- -- -0.0269 -- -- -- -- --
366.8 0.896 7.7 -- 1.28 -- -- -- -0.07 18.2 -- -- -- --
351.39 0.873 7.7 -- -- -1.28 -- -- -0.105 -- 15.16 191 2.61 13.6
451.62 0.992 7.67 -- -- -- -- -- -0.0941 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 293.13 atmosphere 995.0 10 > th dose dependent rect. 5 4
2 293.17 radiation 40.0 30 < th dose independent rect. 5 14
4 294.43 atmosphere 1005.0 10 > th dose independent rect. 5 4
5 294.60 humidity 50.0 10 > th dose dependent rect. 19 10
9 295.11 precipitation 0.1 10 < th dose independent rect. 5 4
10 295.11 precipitation 0.1 10 < th dose dependent rect. 5 4
12 295.31 wind 9.0 10 < th dose independent rect. 9 20
14 295.50 wind 7.0 10 < th dose independent rect. 5 4
16 295.50 temperature 10.0 10 > th dose independent rect. 5 4
18 295.50 temperature 30.0 10 < th dose independent rect. 5 4
19 295.50 humidity 50.0 10 > th dose independent rect. 5 4
21 295.50 atmosphere 995.0 10 > th dose independent rect. 5 4
22 295.50 atmosphere 1015.0 10 < th dose independent rect. 5 4
23 295.50 temperature 10.0 10 > th dose independent rect. 9 20
24 295.52 radiation 40.0 30 < th dose dependent rect. 5 14
39 296.59 temperature 20.0 30 > th dose independent rect. 19 10
41 297.04 wind 9.0 10 < th dose dependent rect. 5 4
44 297.31 radiation 40.0 10 < th dose independent rect. 5 4
45 297.59 humidity 90.0 10 < th dose independent rect. 5 4
49 298.01 radiation 1.0 30 < th dose dependent rect. 19 10
50 298.12 temperature 20.0 10 > th dose independent rect. 22 7
51 298.20 wind 9.0 30 < th dose independent rect. 19 10
56 298.26 temperature 10.0 30 > th dose independent rect. 19 10
57 298.26 temperature 30.0 30 < th dose independent rect. 19 10
58 298.26 humidity 50.0 30 > th dose independent rect. 19 10
60 298.26 atmosphere 995.0 30 > th dose independent rect. 19 10
61 298.26 radiation 1.0 30 < th dose independent rect. 19 10
66 298.26 temperature 10.0 30 > th dose independent rect. 5 14
68 298.26 atmosphere 1015.0 30 < th dose independent rect. 5 14
69 298.38 atmosphere 995.0 10 > th dose independent rect. 9 20
71 298.55 precipitation 0.1 10 < th dose independent rect. 9 20
72 298.55 precipitation 0.1 10 < th dose dependent rect. 9 20
73 298.68 precipitation 0.1 30 < th dose independent rect. 5 14
74 298.68 precipitation 0.1 30 < th dose dependent rect. 5 14
76 299.11 atmosphere 995.0 30 > th dose independent rect. 5 14
78 299.25 wind 9.0 30 < th dose independent rect. 5 14
88 299.87 temperature 25.0 270 < th dose independent rect. 4 1
91 299.96 radiation 1.0 30 > th dose independent rect. 18 15
94 300.04 radiation 1.0 10 > th dose independent rect. 5 4
105 300.05 humidity 50.0 30 > th dose independent rect. 9 20
107 300.14 wind 1.0 30 > th dose independent rect. 5 4
109 300.24 temperature 30.0 270 < th dose dependent rect. 3 3
130 300.41 radiation 1.0 30 < th dose dependent rect. 19 21
146 300.61 radiation 1.0 90 < th dose dependent sin 12 NA
150 300.77 radiation 1.0 30 < th dose dependent rect. 19 19
165 301.42 atmosphere 995.0 270 > th dose dependent rect. 4 2
166 301.46 radiation 1.0 90 > th dose independent sin 12 NA
175 301.88 temperature 10.0 10 > th dose dependent rect. 5 4
181 302.06 radiation 40.0 10 < th dose dependent rect. 5 4
182 302.06 temperature 10.0 30 > th dose dependent rect. 19 10
183 302.10 atmosphere 1010.0 270 < th dose independent rect. 4 2
186 302.18 wind 9.0 270 < th dose independent rect. 6 22
187 302.25 wind 5.0 270 < th dose independent rect. 4 2
188 302.28 atmosphere 1005.0 270 > th dose independent rect. 4 2
190 302.31 precipitation 0.1 270 < th dose independent rect. 4 2
191 302.31 precipitation 0.1 270 < th dose dependent rect. 4 2
201 302.59 temperature 30.0 270 < th dose dependent rect. 4 1
207 302.81 temperature 10.0 270 > th dose independent rect. 4 2
210 302.81 humidity 50.0 270 > th dose independent rect. 4 2
213 302.81 atmosphere 995.0 270 > th dose independent rect. 4 2
215 302.81 radiation 20.0 270 < th dose independent rect. 4 2
218 302.81 temperature 10.0 270 > th dose independent rect. 6 22
219 302.89 temperature 30.0 30 < th dose dependent rect. 5 4
233 303.53 precipitation 0.1 30 < th dose independent rect. 19 10
234 303.53 radiation 40.0 270 < th dose dependent rect. 4 2
235 303.53 precipitation 0.1 30 < th dose dependent rect. 19 10
236 303.57 radiation 1.0 30 < th dose independent rect. 19 19
240 303.69 atmosphere 1015.0 10 < th dose independent rect. 9 20
244 303.77 humidity 90.0 30 < th dose independent rect. 2 7
254 304.00 wind 9.0 270 < th dose dependent rect. 4 2
282 304.44 radiation 1.0 30 > th dose independent rect. 16 17
338 305.51 radiation 1.0 270 > th dose independent rect. 4 2
390 305.79 radiation 1.0 90 < th dose independent sin 12 NA
440 306.40 radiation 30.0 90 < th dose independent rect. 4 7
442 306.40 temperature 30.0 270 < th dose dependent rect. 2 5
445 306.43 radiation 20.0 270 < th dose dependent rect. 3 5
479 306.85 humidity 60.0 10 > th dose independent rect. 5 14
480 306.92 wind 1.0 270 > th dose independent rect. 3 3
481 306.92 wind 9.0 30 < th dose dependent rect. 19 10
501 307.11 precipitation 0.1 270 < th dose independent rect. 3 14
502 307.11 precipitation 0.1 270 < th dose dependent rect. 3 14
525 307.17 wind 1.0 270 > th dose independent rect. 2 5
528 307.18 temperature 30.0 30 < th dose independent rect. 5 14
533 307.23 precipitation 0.1 270 < th dose independent rect. 6 22
534 307.23 precipitation 0.1 270 < th dose dependent rect. 6 22
547 307.31 humidity 50.0 270 > th dose dependent rect. 4 2
560 307.39 humidity 50.0 30 > th dose dependent rect. 5 4
647 308.10 temperature 10.0 10 > th dose dependent rect. 9 20
658 308.22 wind 1.0 30 > th dose independent rect. 5 14
702 308.46 atmosphere 1015.0 30 < th dose independent rect. 19 10
723 308.66 temperature 10.0 1440 > th dose independent rect. 6 4
726 308.66 atmosphere 995.0 1440 > th dose independent rect. 6 4
727 308.66 atmosphere 1015.0 1440 < th dose independent rect. 6 4
728 308.66 temperature 10.0 1440 > th dose independent rect. 10 20
751 308.80 humidity 50.0 270 > th dose independent rect. 6 22
753 308.80 radiation 30.0 270 < th dose dependent rect. 16 11
802 309.28 radiation 1.0 270 < th dose dependent rect. 6 21
861 309.76 wind 9.0 270 < th dose independent rect. 17 10
864 309.78 radiation 1.0 90 < th dose dependent rect. 8 20
873 309.86 radiation 1.0 90 < th dose dependent rect. 12 16
875 309.87 temperature 10.0 270 > th dose independent rect. 17 10
876 309.87 radiation 20.0 270 < th dose independent rect. 17 10
883 309.87 humidity 50.0 720 > th dose dependent rect. 17 11
903 310.08 radiation 40.0 10 < th dose independent rect. 5 17
944 310.41 humidity 50.0 270 > th dose independent rect. 17 10
954 310.51 humidity 50.0 1440 > th dose independent rect. 6 4
984 310.77 radiation 1.0 270 < th dose independent rect. 9 18