BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0534800 Os01g0534800|AK072168
(569 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0534800 Similar to PRLI-interacting factor K (Fragment) 1058 0.0
Os04g0577000 Ubiquitin fusion degradation protein UFD1 fami... 105 1e-22
Os02g0181800 Similar to Ubiquitin fusion degradation 1-like 102 8e-22
Os01g0144500 79 1e-14
>Os01g0534800 Similar to PRLI-interacting factor K (Fragment)
Length = 569
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/523 (97%), Positives = 510/523 (97%)
Query: 47 SHRERRLDAARAQEEAQQKMEEVMQLGKGISFLHMFEALRYDGPGDKIKLPPSSFKELSD 106
SHRERRLDAARAQEEAQQKMEEVMQLGKGISFLHMFEALRYDGPGDKIKLPPSSFKELSD
Sbjct: 47 SHRERRLDAARAQEEAQQKMEEVMQLGKGISFLHMFEALRYDGPGDKIKLPPSSFKELSD 106
Query: 107 EGALDKGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTAREGSAELTPHVWNNLFRG 166
EGALDKGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTAREGSAELTPHVWNNLFRG
Sbjct: 107 EGALDKGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTAREGSAELTPHVWNNLFRG 166
Query: 167 DSPDVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLETALRNHATLSENDFVVVNY 226
DSPDVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLETALRNHATLSENDFVVVNY
Sbjct: 167 DSPDVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLETALRNHATLSENDFVVVNY 226
Query: 227 GQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVLDNVENQHVLVPLETGKVESGVVEE 286
GQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVLDNVENQHVLVPLETGKVESGVVEE
Sbjct: 227 GQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVLDNVENQHVLVPLETGKVESGVVEE 286
Query: 287 GKFRYYKFLVDEGMGEKVASRHANIEVKIETYTSGGDTDIYVSRHPLVFPTQHRHEWSSH 346
GKFRYYKFLVDEGMGEKVASRHANIEVKIETYTSGGDTDIYVSRHPLVFPTQHRHEWSSH
Sbjct: 287 GKFRYYKFLVDEGMGEKVASRHANIEVKIETYTSGGDTDIYVSRHPLVFPTQHRHEWSSH 346
Query: 347 EMGSKVLILKPRDASLSSGTYSIGVYGFKGTTKYQLSVAIKDVLNGQRIGEQXXXXXXXX 406
EMGSKVLILKPRDASLSSGTYSIGVYGFKGTTKYQLSVAIKDVLNGQRIGEQ
Sbjct: 347 EMGSKVLILKPRDASLSSGTYSIGVYGFKGTTKYQLSVAIKDVLNGQRIGEQASASSSVD 406
Query: 407 XXXXXCKNCKRYISNRTSLLHEAYCVRHNVVCMHDGCGVVLRKEEATDHVHCNKCGQAFQ 466
CKNCKRYISNRTSLLHEAYCVRHNVVCMHDGCGVVLRKEEATDHVHCNKCGQAFQ
Sbjct: 407 VDSVVCKNCKRYISNRTSLLHEAYCVRHNVVCMHDGCGVVLRKEEATDHVHCNKCGQAFQ 466
Query: 467 QREMEKHMKVFHEPLQCPCGVVLEKEDMVQHQSSTCPLRLIVCRFCGDTVQAGGEPLDAR 526
QREMEKHMKVFHEPLQCPCGVVLEKEDMVQHQSSTCPLRLIVCRFCGDTVQAGGEPLDAR
Sbjct: 467 QREMEKHMKVFHEPLQCPCGVVLEKEDMVQHQSSTCPLRLIVCRFCGDTVQAGGEPLDAR 526
Query: 527 DRLRNMCEHESICGSRTAPCDSCGRSVMLKDMDIHVIAVHQKS 569
DRLRNMCEHESICGSRTAPCDSCGRSVMLKDMDIHVIAVHQKS
Sbjct: 527 DRLRNMCEHESICGSRTAPCDSCGRSVMLKDMDIHVIAVHQKS 569
>Os04g0577000 Ubiquitin fusion degradation protein UFD1 family protein
Length = 320
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 118/242 (48%), Gaps = 34/242 (14%)
Query: 82 FEALRYDGP----GDKIKLPPSSFKELSDEGALDKGPMYFRLSKVRDSVPGAPQDNDADE 137
+ A +D P GDK+ +PPS+ L+ + PM F L NDA +
Sbjct: 20 YPASFFDKPHLEGGDKVIMPPSALDRLASLHI--EYPMLFELH------------NDATQ 65
Query: 138 ATC-CGVLEFTAREGSAELTPHVWNNLF--RGDSPDVPLIEVRYVSLPKGTYAKLKPEGV 194
CGVLEF A EG + + N+ GD+ + V+ +LPKGTY KL+P
Sbjct: 66 RISHCGVLEFVAEEGMIIMPYWMMQNMLLQEGDT-----VRVKNTTLPKGTYVKLQPHTT 120
Query: 195 GFSDLPNHRAVLETALRNHATLSENDFVVVNYGQLQYKLKVLELKPASSVSVLETDVEVD 254
F D+ N +A+LE LR + ++ D ++V Y QY + ++E KPAS+VS++ETD EVD
Sbjct: 121 DFLDISNPKAILEKTLRKLSCITTGDSIMVAYNNKQYYIDIVETKPASAVSIIETDCEVD 180
Query: 255 IEGPDSVLDNVENQHVLVPLETGKVE---SGVVEEGKFRYYKFLVDEGMGEKVASRHANI 311
P + Q VP E + V +E KF+ + G G+++ + + +
Sbjct: 181 FAPPLDYKEPENPQQPSVPASEATAEDENAKVEDELKFKPFT-----GSGKRLDGKASKL 235
Query: 312 EV 313
+
Sbjct: 236 QA 237
>Os02g0181800 Similar to Ubiquitin fusion degradation 1-like
Length = 324
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 25/187 (13%)
Query: 91 GDKIKLPPSSFKELSDEGALDKGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTARE 150
GDKI +PPS+ L+ + PM F + + A+ + CGVLEF A E
Sbjct: 42 GDKIIMPPSALDRLASLHI--EYPMLFEV-----------HNAAAERTSHCGVLEFIAEE 88
Query: 151 GSAELTPHVWNNLF--RGDSPDVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLET 208
G + + NL GD ++ ++ +LPKGTY KL+P F D+ N +A+LE
Sbjct: 89 GMIYMPYWMMQNLLLTEGD-----MVFIKNANLPKGTYVKLQPHTTDFLDISNPKAILEK 143
Query: 209 ALRNHATLSENDFVVVNYGQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVLD--NVE 266
LRN++ L+ D ++V Y +Y + ++E KP++++S++ETD EVD P LD E
Sbjct: 144 TLRNYSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPP---LDYKEPE 200
Query: 267 NQHVLVP 273
Q VP
Sbjct: 201 RQKAAVP 207
>Os01g0144500
Length = 281
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 22/208 (10%)
Query: 91 GDKIKLPPSSFKELSDEGALD-KGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTAR 149
G+++ +P S+ L G L + PM F++ Q+ + + CGVLEFTA
Sbjct: 34 GNRVFMPVSALDRL---GYLHIEYPMQFQI-----------QNATTLQTSYCGVLEFTAD 79
Query: 150 EGSAELTPHVWNNLFRGDSPDVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLETA 209
EG + + +L ++ L+ +R S+PK T+ KL+P F L R +LE
Sbjct: 80 EGFIHIPTMMMEHLGLREND---LVLLRSTSIPKATFIKLQPHTSDFHKLSEPRYLLEYN 136
Query: 210 LRNHATLSENDFVVVNYGQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVLDNVENQH 269
RN+ L+ + + V G Y L V+E +PA +V V+ETD EV+ D LD E
Sbjct: 137 FRNYFCLTTGETIAVAAGDRFYYLDVVETRPADAVCVIETDCEVEF---DQALDQAEPAA 193
Query: 270 VLVPLETGKVESGVVEEGKFRYYKFLVD 297
++ V +G E +F ++ +D
Sbjct: 194 AAA-MQVDGVGAGEPEPARFTGFRMRMD 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,453,447
Number of extensions: 812629
Number of successful extensions: 1682
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1672
Number of HSP's successfully gapped: 5
Length of query: 569
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 463
Effective length of database: 11,501,117
Effective search space: 5325017171
Effective search space used: 5325017171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)