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Os04g0577000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ubiquitin fusion degradation protein UFD1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.86 (0.0171) R2 : 0.0253
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.124 (0.0359) R2dN8 : 0.0327 R2N8 : 0.0253
σ : 0.321
deviance : 47.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.72 0.265 7.84 0.51 0.219 -0.519 0.838 -0.24 -0.0145 14.1 1.1 1417 -- --
31.69 0.262 7.84 0.521 0.217 -0.506 0.885 -- -0.0129 14.7 1.263 1384 -- --
34 0.272 7.84 0.515 0.225 -0.533 -- -0.415 -0.0101 13 1.091 1417 -- --
34.06 0.272 7.84 0.549 0.223 -0.49 -- -- -0.0108 12.7 1.31 1424 -- --
35.56 0.278 7.85 0.522 -- -0.634 -- -0.292 -0.00172 -- 1.296 1334 -- --
35.09 0.278 7.85 0.441 0.251 -- 0.863 -- -0.072 13.9 -- -- -- --
37.62 0.287 7.85 0.467 0.259 -- -- -- -0.0683 12.7 -- -- -- --
35.79 0.279 7.85 0.525 -- -0.652 -- -- 0.00101 -- 1.309 1335 -- --
40.6 0.297 7.83 -- 0.341 -0.452 -- -- -0.0254 12.7 7.76 3146 -- --
41.81 0.302 7.85 0.458 -- -- -- -- -0.0728 -- -- -- -- --
43.37 0.308 7.86 -- 0.251 -- -- -- -0.12 12.6 -- -- -- --
42.78 0.305 7.85 -- -- -0.459 -- -- -0.0648 -- 6.81 2666 -- --
47.34 0.321 7.86 -- -- -- -- -- -0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.34 humidity 70 720 > th dose independent rect. 19 8
2 30.43 humidity 60 720 > th dose dependent rect. 19 5
4 30.63 radiation 20 14400 < th dose independent rect. 18 12
6 30.64 temperature 30 1440 > th dose dependent rect. 18 1
21 30.72 humidity 80 720 > th dose dependent rect. 21 2
41 30.87 temperature 15 720 > th dose dependent rect. 17 6
43 30.97 radiation 20 1440 < th dose dependent rect. 18 9
56 31.10 radiation 10 1440 < th dose dependent rect. 18 1
64 31.13 humidity 50 1440 < th dose independent rect. 16 1
66 31.13 radiation 10 1440 < th dose dependent rect. 18 4
87 31.16 radiation 40 14400 > th dose dependent rect. 15 18
88 31.17 radiation 20 14400 < th dose independent rect. 22 8
89 31.17 humidity 50 1440 < th dose dependent rect. 16 1
90 31.18 radiation 30 14400 < th dose independent rect. 16 11
93 31.19 radiation 40 14400 > th dose dependent rect. 8 1
96 31.20 temperature 20 720 > th dose dependent rect. 18 1
103 31.20 radiation 10 1440 < th dose dependent rect. 18 7
118 31.22 radiation 20 14400 < th dose independent rect. 3 3
120 31.23 radiation 30 14400 < th dose independent rect. 16 3
123 31.24 radiation 30 14400 < th dose independent rect. 16 1
126 31.24 radiation 30 14400 < th dose independent rect. 16 6
130 31.25 radiation 30 14400 < th dose independent rect. 16 9
138 31.29 radiation 1 1440 > th dose dependent rect. 18 1
150 31.30 humidity 80 720 > th dose independent rect. 21 1
154 31.32 wind 3 90 < th dose dependent rect. 3 2
157 31.33 atmosphere 1005 30 > th dose independent rect. 16 14
164 31.35 temperature 30 720 < th dose dependent rect. 19 5
165 31.35 humidity 90 720 < th dose dependent rect. 17 6
171 31.37 humidity 80 720 < th dose independent rect. 16 6
174 31.39 temperature 20 90 > th dose dependent rect. 3 2
177 31.40 temperature 30 720 < th dose independent rect. 17 7
184 31.42 temperature 20 90 > th dose independent rect. 3 2
186 31.42 atmosphere 1005 10 > th dose independent rect. 14 16
198 31.46 radiation 10 14400 > th dose independent rect. 5 1
210 31.46 humidity 70 720 > th dose independent rect. 18 13
216 31.47 wind 5 43200 > th dose independent rect. 18 20
218 31.48 wind 5 43200 < th dose independent rect. 18 20
223 31.49 wind 5 43200 < th dose independent rect. 22 17
227 31.50 wind 5 43200 > th dose independent rect. 22 17
251 31.52 wind 9 90 < th dose dependent rect. 5 22
253 31.53 wind 5 43200 > th dose independent rect. 18 12
272 31.55 humidity 70 1440 < th dose dependent rect. 18 2
287 31.56 wind 5 43200 < th dose independent rect. 18 12
297 31.57 radiation 1 1440 > th dose independent rect. 18 1
318 31.58 wind 5 43200 > th dose independent sin 11 NA
319 31.58 wind 5 43200 > th dose independent rect. 19 9
331 31.58 humidity 90 90 > th dose dependent rect. 3 2
333 31.59 humidity 70 1440 < th dose independent rect. 19 1
342 31.59 radiation 1 1440 < th dose independent rect. 18 9
345 31.59 temperature 25 720 > th dose independent rect. 14 10
359 31.60 wind 5 43200 < th dose independent sin 11 NA
369 31.61 radiation 1 1440 < th dose independent rect. 18 1
371 31.61 radiation 1 1440 < th dose independent rect. 18 4
377 31.61 wind 3 43200 > th dose dependent rect. 24 1
380 31.61 wind 7 10 < th dose dependent rect. 6 12
396 31.62 temperature 25 720 > th dose dependent rect. 22 1
401 31.62 wind 5 43200 > th dose dependent rect. 18 20
403 31.63 wind 5 43200 > th dose independent sin 4 NA
404 31.63 radiation 1 1440 < th dose independent rect. 18 7
413 31.63 wind 5 43200 > th dose dependent rect. 21 17
415 31.64 wind 9 14400 > th dose independent rect. 16 1
427 31.65 wind 5 43200 < th dose independent sin 4 NA
429 31.65 temperature 30 1440 > th dose independent rect. 13 1
432 31.65 temperature 30 1440 < th dose independent rect. 18 10
465 31.66 radiation 1 720 < th dose dependent rect. 5 21
481 31.68 wind 5 43200 > th dose independent rect. 8 6
482 31.68 wind 5 43200 < th dose independent rect. 8 6
491 31.68 wind 5 10 < th dose independent rect. 6 12
508 31.69 atmosphere 1005 90 > th dose independent rect. 3 2
523 31.69 wind 3 43200 > th dose dependent rect. 19 10
538 31.70 atmosphere 1005 270 > th dose independent rect. 14 15
549 31.70 humidity 80 720 > th dose dependent rect. 4 20
554 31.71 wind 5 43200 < th dose independent rect. 10 4
568 31.71 wind 5 43200 > th dose dependent sin 11 NA
571 31.71 wind 1 43200 > th dose dependent rect. 24 4
593 31.72 radiation 1 720 > th dose independent rect. 17 21
602 31.73 temperature 25 720 > th dose independent rect. 16 3
636 31.74 wind 7 43200 < th dose independent rect. 9 1
667 31.74 wind 5 43200 > th dose dependent sin 5 NA
672 31.74 wind 3 30 < th dose dependent rect. 3 8
675 31.74 wind 9 10 < th dose dependent rect. 6 10
684 31.75 temperature 25 720 > th dose independent rect. 11 13
697 31.75 humidity 90 43200 > th dose dependent rect. 10 1
700 31.75 wind 3 10 < th dose dependent rect. 3 5
720 31.76 temperature 20 10 > th dose independent rect. 11 19
721 31.76 radiation 1 1440 > th dose independent rect. 10 19
725 31.76 wind 1 43200 > th dose dependent rect. 2 2
727 31.76 wind 9 43200 < th dose dependent rect. 24 4
744 31.77 radiation 1 1440 > th dose independent sin 15 NA
746 31.77 humidity 50 1440 > th dose independent rect. 16 1
754 31.77 radiation 1 1440 > th dose independent rect. 10 9
771 31.77 radiation 1 1440 > th dose independent rect. 12 17
775 31.77 radiation 40 14400 < th dose independent rect. 15 18
776 31.77 radiation 1 720 < th dose independent rect. 5 21
782 31.77 wind 3 10 < th dose dependent rect. 3 3
813 31.78 radiation 1 1440 > th dose independent rect. 12 7
826 31.78 wind 5 90 < th dose independent rect. 5 12
871 31.79 temperature 25 14400 < th dose independent rect. 2 1
872 31.79 temperature 30 1440 < th dose independent rect. 18 2
938 31.80 wind 7 90 < th dose independent rect. 5 22
939 31.80 humidity 90 720 < th dose dependent rect. 18 1
991 31.82 wind 7 43200 > th dose independent rect. 9 1