BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0509900 Os01g0509900|AK109797
(546 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0509900 Conserved hypothetical protein 987 0.0
Os01g0382600 169 4e-42
Os07g0517700 Cyclin-like F-box domain containing protein 91 3e-18
Os05g0147700 Cyclin-like F-box domain containing protein 74 3e-13
Os01g0382500 Conserved hypothetical protein 73 5e-13
>Os01g0509900 Conserved hypothetical protein
Length = 546
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/546 (91%), Positives = 497/546 (91%)
Query: 1 MALQPFTDDLLAEIXXXXXXXXXXXXXXXXXKCWLAVASGPDFLRRFRARHTSSPLLGLF 60
MALQPFTDDLLAEI KCWLAVASGPDFLRRFRARHTSSPLLGLF
Sbjct: 1 MALQPFTDDLLAEILLRLPSAASLQRAALASKCWLAVASGPDFLRRFRARHTSSPLLGLF 60
Query: 61 VSHGSSGLPVFHPAATVRSDPDLGAAVLGGDFSLIRVGDGEDPRWQLRDCRNGRLLLCGG 120
VSHGSSGLPVFHPAATVRSDPDLGAAVLGGDFSLIRVGDGEDPRWQLRDCRNGRLLLCGG
Sbjct: 61 VSHGSSGLPVFHPAATVRSDPDLGAAVLGGDFSLIRVGDGEDPRWQLRDCRNGRLLLCGG 120
Query: 121 RSVAVYDXXXXXXXXXXXXQDDPFSDAYIADCLLHGRGDNGAASFRVVSVQRHGRRMRAA 180
RSVAVYD QDDPFSDAYIADCLLHGRGDNGAASFRVVSVQRHGRRMRAA
Sbjct: 121 RSVAVYDPVSRRRVSIRRPQDDPFSDAYIADCLLHGRGDNGAASFRVVSVQRHGRRMRAA 180
Query: 181 EYNSGTREWSFHPWVENMRRPRRGQAMHAAGIIFWKCEDNFVILLDTLTMEFSMLSLPVS 240
EYNSGTREWSFHPWVENMRRPRRGQAMHAAGIIFWKCEDNFVILLDTLTMEFSMLSLPVS
Sbjct: 181 EYNSGTREWSFHPWVENMRRPRRGQAMHAAGIIFWKCEDNFVILLDTLTMEFSMLSLPVS 240
Query: 241 LFQPSKYAIGEMEDGVCCLVCLDGTMDNVHMQVWLLMEEDGGGRRWELEKEMPVSEVLDR 300
LFQPSKYAIGEMEDGVCCLVCLDGTMDNVHMQVWLLMEEDGGGRRWELEKEMPVSEVLDR
Sbjct: 241 LFQPSKYAIGEMEDGVCCLVCLDGTMDNVHMQVWLLMEEDGGGRRWELEKEMPVSEVLDR 300
Query: 301 HSLVRQVRTVASGLVLVSWDDRYPQFAIDLKNMKVMAEFRCSGETYLFQTPWPPALLVDS 360
HSLVRQVRTVASGLVLVSWDDRYPQFAIDLKNMKVMAEFRCSGETYLFQTPWPPALLVDS
Sbjct: 301 HSLVRQVRTVASGLVLVSWDDRYPQFAIDLKNMKVMAEFRCSGETYLFQTPWPPALLVDS 360
Query: 361 EYVEPLQMIATQNMMKHVNLAAERTDVVNSEGPLDLVLEPHGPLDAQQAMAAEAETLVVT 420
EYVEPLQMIATQNMMKHVNLAAERTDVVNSEGPLDLVLEPHGPLDAQQAMAAEAETLVVT
Sbjct: 361 EYVEPLQMIATQNMMKHVNLAAERTDVVNSEGPLDLVLEPHGPLDAQQAMAAEAETLVVT 420
Query: 421 ADLKLVRSTEAQNQSVAEKPEIMKGPEVPVSKRSMSRLEKRRGERYESALHKAMERKARY 480
ADLKLVRSTEAQNQSVAEKPEIMKGPEVPVSKRSMSRLEKRRGERYESALHKAMERKARY
Sbjct: 421 ADLKLVRSTEAQNQSVAEKPEIMKGPEVPVSKRSMSRLEKRRGERYESALHKAMERKARY 480
Query: 481 MGGVEQLSTSLGRNYRRSEKPIVVDSSXXXXXXXXXXXXKPIVVDSRYGKXXXXXXXXPA 540
MGGVEQLSTSLGRNYRRSEKPIVVDSS KPIVVDSRYGK PA
Sbjct: 481 MGGVEQLSTSLGRNYRRSEKPIVVDSSYERYYQCRQRREKPIVVDSRYGKYYQRRQRRPA 540
Query: 541 AGVQGR 546
AGVQGR
Sbjct: 541 AGVQGR 546
>Os01g0382600
Length = 401
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 180/384 (46%), Gaps = 30/384 (7%)
Query: 2 ALQPFTDDLLAEIXXXXXXXXXXXXXXXXXKCWLAVASGPDFLRRFRARHTSSPLLGLFV 61
++ DD+L EI A+AS FLRRFR H S LLG F
Sbjct: 25 SIDSLNDDVLEEILVRLPCIASLARAACACARLRAIASSWAFLRRFRTLHPS--LLGHFA 82
Query: 62 SHG--SSGLPVFHPAATVRSDPDLGAAVLGGDFSLIRVGDGEDPRWQLRDCRNGRLLLCG 119
+ S +P FHPA + D AAV GGDF L RV + W+++DCR+GRLL
Sbjct: 83 TDADDESVIPTFHPA-RAQFDGCSDAAVRGGDFFLTRVD--ANAGWRVQDCRHGRLLFAN 139
Query: 120 GRSVAVYDXXXXXXXXXXXXQDDPFSDAYIADCLLHGRGDNGA-ASFRVVSVQRHGRRM- 177
+ VYD P S + CLL G G +G SFRVVSV+ +G R
Sbjct: 140 ESDLLVYDPLSRRGVSIRRPSWYPSS--HFTHCLLAGYGGDGCPGSFRVVSVEHNGERAA 197
Query: 178 RAAEYNSGTREWSFHPW----VENMRRPRRGQ---AMHAAGIIFWKCEDNFVI-LLDTLT 229
R A Y+S T W W V N +RP M AAG I+WK D + + D
Sbjct: 198 RGAVYSSCTGAWRRGRWDYDRVINPKRPSEYSYFPGMQAAGRIYWKHRDTTKLQVFDAGP 257
Query: 230 MEFSMLSLPVSLFQPSKYAIGEMEDGVCCLVCLDGTMDNVHMQVWLLMEEDGG---GRRW 286
M FS + LP + SKYA+GE EDG CCLV L +VW L G W
Sbjct: 258 MRFSYVHLPEGVHPRSKYAVGEAEDGGCCLVVLADAPHGTVFKVWRLRTGKGSWPWAWTW 317
Query: 287 ELEKEMPVSEVLDR--HSLVRQVRTVASGLVLVSWDDR---YPQFAIDLKNMKVMAEFRC 341
ELE+ +P EV+ + + +R V V +G+VL+ + + + A L NM+V A FR
Sbjct: 318 ELERRLPACEVIGKVQYPPIRHVCAVVAGVVLICFQNHAGPHRHIAFWLSNMQVEATFRS 377
Query: 342 SGETYLFQTPW---PPALLVDSEY 362
+G Y F PW P LL +++
Sbjct: 378 AGWAYPFLMPWRHSSPLLLPSAKF 401
>Os07g0517700 Cyclin-like F-box domain containing protein
Length = 439
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 127/301 (42%), Gaps = 47/301 (15%)
Query: 36 AVASGPDFLRRFRARHTSSPLLGLFVSHGSSGLPVFHPA--ATVRSDP---DLGAAVLGG 90
AVAS P F RFRA H P LGLF + + PA + V S P D+ AAV GG
Sbjct: 62 AVASSPAFRARFRATH-GPPFLGLFFAPSAPAQAPNVPAFPSFVPSRPRYRDMAAAVRGG 120
Query: 91 DFSLIRVGD---GEDPRWQLRDCRNGRLLLCGGRS--VAVYDXXXXXXXXXXXXQDDPFS 145
DF L + D E W + + G LL AV + FS
Sbjct: 121 DFFLTSLQDRPHDEQQCWDVMEICGGHCLLMNWDDGLFAVLNPLTRRTEFVVDLSSAEFS 180
Query: 146 DAYIADCLLHGR---------GDNGAASFRVVSVQRHGRRMRAA---EYNSGTREWSFHP 193
D C H D SFR+V + R+RA+ N+G EWS P
Sbjct: 181 DGA---CGQHHTVELTPRLICSDGHPKSFRLVVLAIDDSRVRASICSSDNTGEWEWSSLP 237
Query: 194 WVENMRRPRRGQ----------AMHAAGIIFWKCEDN-FVILLDTLTMEFSMLSLPVSLF 242
WV+ + P R M A G ++W ED +++ LD TM FS + LP L
Sbjct: 238 WVD-IPEPVRSDDTGCWLLNEGTMQANGSLYWVYEDRRYLLSLDAATMAFSAVQLPQCLR 296
Query: 243 QPSKYAIGEMEDGVCCLVCLDGTMDNVHMQVWLLME---EDGGGRRWELEKEMPVSEVLD 299
S +GE +DG C+V + V +LM +DG RW +++ +P+ + L+
Sbjct: 297 HCSSLDVGETKDGATCIVYAH------QLNVGVLMHTKGDDGAAERWVMDRVVPLGKELE 350
Query: 300 R 300
R
Sbjct: 351 R 351
>Os05g0147700 Cyclin-like F-box domain containing protein
Length = 456
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 158/404 (39%), Gaps = 61/404 (15%)
Query: 6 FTDDLLAEIXXXXXXXXXXXXXXXXXKCWLAVASGPDFLRRFRARHTSSPLLGLFVSHGS 65
+DDLL E+ K +L A FLRRFR RH LLG + H
Sbjct: 15 LSDDLLREVFLLLPTAADLVRASLACKPFLRAARNAGFLRRFRRRHGPL-LLGCLLHHAD 73
Query: 66 SGLPVFHPAATVRSDPDLGAAVLGGDFSLIRVGDGEDPR------WQLRDCRNGRLLLC- 118
PVF P++ + AA GDFSL + G W+ DCRNGR+LL
Sbjct: 74 LPAPVFVPSSPAAAA---AAARADGDFSLSFLPHGGWLGGGGGAPWRFLDCRNGRVLLKN 130
Query: 119 -GGRSVAVYDXXXXXXXXXXXXQDDPFSDAYIADCLLHGRGDNGAASFRVVSVQRHG--- 174
G + +AV D P + + L+ GD+ FRV + + G
Sbjct: 131 RGTQELAVADPLAWSCVSL----PPPPAARAVGYGLVADDGDSSV--FRVFCIAQLGDGD 184
Query: 175 ----RRMRAAEYNSGTREW---SFHPWVENMRRPRRGQAMHAAGIIFWKCEDNF-VILLD 226
RA + G W + HP N+ R AM A G ++W E V+ L+
Sbjct: 185 GGVSSETRAMVLSPGELSWADVAVHPHRLNLAAASR--AMQANGSLYWTLEGGASVVALN 242
Query: 227 TLTMEFSMLSLPVSLFQPSKYAIGEMED----------------GVCCLVCLDGTMDNVH 270
T T EFS+L LP L Q S + + E+ G C V
Sbjct: 243 TATNEFSVLELPPPLRQLSFDVVEKGEEEDGGGGGGPLYLLTMRGFCVEVWAGAGDGGAG 302
Query: 271 MQVWLLMEEDGGGRRWELEKEMPVSE---VLDRHSLVRQVRTVASGLVLVSWDDRYPQFA 327
W +E+ K M + + V H + V VA L L W+ +
Sbjct: 303 ELTWTRVEKSV-----RFHKAMAMLQHDSVEMYHHGLDVVGVVAGVLFLRHWNC---LLS 354
Query: 328 IDLKNMKV--MAEFRCSGET-YLFQTPWPPALLVDSEYVEPLQM 368
IDL+ MK+ +++ CS + Y + PWPP+ L +E+ Q+
Sbjct: 355 IDLETMKLRKLSDEDCSSASIYPYAMPWPPSFLNPAEHEMIFQL 398
>Os01g0382500 Conserved hypothetical protein
Length = 151
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 6 FTDDLLAEIXXXXXXXXXXXXXXXXXKCWLAVASGPDFLRRFRARHT--SSPLLGLFVSH 63
F DD++AE K W VAS P FLRRF A H + PLLG +
Sbjct: 26 FCDDVIAEFLVRLPSVPSLARAACAVKRWRRVASSPAFLRRFHALHPGQAQPLLGHYYYT 85
Query: 64 GSSGLPVFHPAATVRSDPDLGAAVLGGDFSLIRVGDGEDPRWQLRDCRNGRLLL 117
S PVF PA SDP+L A V GDF L V R ++ DC GRLLL
Sbjct: 86 ECSSRPVFQPAQPTFSDPELSAVVRHGDFFLTPVTSMG--RLEVEDCHQGRLLL 137
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,861,984
Number of extensions: 763528
Number of successful extensions: 2061
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2058
Number of HSP's successfully gapped: 5
Length of query: 546
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 440
Effective length of database: 11,501,117
Effective search space: 5060491480
Effective search space used: 5060491480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)