Os05g0147700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os05g0147700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.71 | 0.321 | 9.17 | 1.75 | 0.475 | -0.962 | 0.472 | 3.12 | 0.552 | 1.87 | 26.06 | 1664 | -- | -- |
| 48.98 | 0.326 | 9.27 | 1.02 | 0.552 | -0.55 | 0.562 | -- | 0.36 | 2.06 | 26.6 | 1384 | -- | -- |
| 47.57 | 0.321 | 9.17 | 1.74 | 0.472 | -0.955 | -- | 3.09 | 0.56 | 1.77 | 25.88 | 1679 | -- | -- |
| 49.8 | 0.329 | 9.26 | 0.988 | 0.503 | -0.626 | -- | -- | 0.373 | 2.1 | 26.3 | 1636 | -- | -- |
| 59.79 | 0.362 | 9.23 | 1.11 | -- | -1.02 | -- | 1.76 | 0.428 | -- | 25.88 | 1679 | -- | -- |
| 63.2 | 0.373 | 9.27 | 0.812 | 0.494 | -- | 0.43 | -- | 0.346 | 2.3 | -- | -- | -- | -- |
| 63.88 | 0.374 | 9.27 | 0.8 | 0.494 | -- | -- | -- | 0.343 | 2.3 | -- | -- | -- | -- |
| 60.88 | 0.365 | 9.26 | 0.934 | -- | -0.89 | -- | -- | 0.387 | -- | 25.88 | 1679 | -- | -- |
| 73.84 | 0.4 | 9.29 | -- | 0.509 | -0.455 | -- | -- | 0.229 | 2.04 | 27.6 | 1733 | -- | -- |
| 78.39 | 0.414 | 9.26 | 0.821 | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
| 80.75 | 0.42 | 9.29 | -- | 0.51 | -- | -- | -- | 0.254 | 2.32 | -- | -- | -- | -- |
| 81.91 | 0.422 | 9.28 | -- | -- | -0.745 | -- | -- | 0.295 | -- | 25.1 | 97 | -- | -- |
| 96.17 | 0.458 | 9.28 | -- | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.80 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 2 | 44.93 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 5 | 45.06 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 16 | 45.43 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 17 | 45.44 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 22 | 45.53 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 31 | 45.60 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 34 | 45.60 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 61 | 45.83 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 62 | 45.83 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 106 | 46.10 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 143 | 46.28 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 269 | 46.87 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 271 | 46.89 | humidity | 70.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 274 | 46.92 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 290 | 46.97 | humidity | 70.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 292 | 46.97 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 303 | 47.00 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 305 | 47.01 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 14 |
| 310 | 47.02 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 317 | 47.03 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 6 |
| 333 | 47.08 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 353 | 47.13 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 383 | 47.15 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 407 | 47.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 463 | 47.26 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 477 | 47.27 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 544 | 47.35 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 555 | 47.38 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 563 | 47.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 566 | 47.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 573 | 47.40 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 593 | 47.42 | humidity | 70.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 596 | 47.42 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 609 | 47.44 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 623 | 47.46 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 646 | 47.47 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 658 | 47.48 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 660 | 47.49 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 662 | 47.49 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 665 | 47.49 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 795 | 47.64 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 801 | 47.66 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 820 | 47.68 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 821 | 47.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 822 | 47.69 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 854 | 47.71 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 876 | 47.74 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 891 | 47.75 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 958 | 47.83 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 974 | 47.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 975 | 47.85 | humidity | 70.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 999 | 47.87 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 14 |