FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0509900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0252) R2 : 0.00484
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0791 (0.0531) R2dN8 : 0.00625 R2N8 : 0.00484
σ : 0.475
deviance : 103.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.91 0.427 3.09 -0.333 0.549 0.808 -0.283 -0.306 -0.0589 23.5 10 90 -- --
83.97 0.427 3.09 -0.287 0.55 0.801 -0.229 -- -0.0467 23.5 8.475 89 -- --
84.19 0.427 3.09 -0.283 0.553 0.806 -- -0.0313 -0.0476 23.5 9.54 87 -- --
84.19 0.427 3.09 -0.28 0.552 0.806 -- -- -0.0462 23.5 9.214 89 -- --
92.13 0.447 3.09 -0.381 -- 0.845 -- -0.356 -0.0765 -- -3.231 696 -- --
90.39 0.446 3.06 -0.122 0.458 -- -0.215 -- 0.0666 21.9 -- -- -- --
90.57 0.446 3.06 -0.113 0.46 -- -- -- 0.0672 21.9 -- -- -- --
92.23 0.447 3.08 -0.317 -- 0.839 -- -- -0.0594 -- -0.9137 696 -- --
86.02 0.434 3.08 -- 0.563 0.679 -- -- -0.000918 23.1 11.75 84 -- --
103.21 0.475 3.05 -0.108 -- -- -- -- 0.0671 -- -- -- -- --
90.91 0.446 3.06 -- 0.459 -- -- -- 0.0798 21.8 -- -- -- --
94.61 0.453 3.07 -- -- 0.721 -- -- -0.00949 -- 3.94 675 -- --
103.52 0.475 3.05 -- -- -- -- -- 0.0791 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.75 wind 1.0 270 < th dose dependent rect. 24 1
2 82.19 wind 1.0 270 < th dose independent rect. 23 2
3 82.24 precipitation 0.1 10 > th dose independent rect. 3 1
7 82.24 precipitation 0.1 10 > th dose dependent rect. 3 1
11 82.25 radiation 10.0 720 < th dose independent rect. 16 1
12 82.34 humidity 90.0 14400 > th dose dependent rect. 6 1
13 82.40 wind 1.0 30 < th dose independent rect. 4 1
14 82.41 wind 1.0 30 < th dose dependent rect. 4 1
20 82.75 humidity 90.0 720 > th dose dependent rect. 20 1
22 82.82 atmosphere 1005.0 270 < th dose independent rect. 23 2
24 82.84 temperature 20.0 4320 > th dose independent rect. 20 1
26 82.91 radiation 10.0 4320 > th dose independent rect. 16 15
27 82.97 wind 1.0 4320 < th dose independent rect. 5 1
32 83.01 atmosphere 1005.0 90 < th dose dependent rect. 1 3
33 83.09 temperature 20.0 4320 < th dose independent rect. 20 1
34 83.09 humidity 90.0 270 > th dose dependent rect. 19 7
41 83.20 radiation 10.0 720 < th dose independent rect. 14 4
43 83.22 atmosphere 995.0 43200 > th dose independent rect. 3 16
51 83.24 atmosphere 995.0 43200 < th dose independent sin 19 NA
52 83.25 wind 1.0 4320 > th dose independent rect. 5 1
53 83.25 atmosphere 995.0 43200 < th dose independent rect. 2 17
60 83.26 atmosphere 1005.0 10 < th dose dependent rect. 24 5
61 83.27 atmosphere 995.0 43200 > th dose independent sin 19 NA
64 83.28 atmosphere 995.0 43200 < th dose independent rect. 3 15
71 83.30 temperature 15.0 90 > th dose dependent rect. 13 23
78 83.34 atmosphere 995.0 43200 < th dose independent rect. 10 14
79 83.34 atmosphere 995.0 43200 > th dose independent rect. 9 15
80 83.34 humidity 90.0 14400 > th dose dependent rect. 4 12
88 83.36 atmosphere 995.0 43200 > th dose independent rect. 8 17
90 83.37 atmosphere 995.0 43200 < th dose independent rect. 8 17
96 83.38 atmosphere 995.0 43200 < th dose independent rect. 12 11
97 83.38 atmosphere 995.0 43200 > th dose independent rect. 11 12
113 83.40 atmosphere 995.0 43200 > th dose independent sin 2 NA
118 83.40 humidity 90.0 14400 > th dose dependent rect. 5 6
156 83.48 atmosphere 995.0 43200 < th dose independent sin 2 NA
184 83.51 temperature 15.0 90 > th dose dependent rect. 5 23
185 83.52 radiation 1.0 1440 > th dose independent rect. 13 2
206 83.56 radiation 10.0 720 < th dose dependent rect. 16 1
212 83.58 humidity 90.0 270 > th dose dependent rect. 13 14
220 83.60 atmosphere 995.0 43200 < th dose dependent rect. 13 10
221 83.60 radiation 10.0 14400 < th dose dependent rect. 18 11
223 83.60 radiation 10.0 4320 > th dose dependent rect. 17 13
253 83.67 temperature 15.0 90 > th dose dependent rect. 23 23
261 83.69 atmosphere 1000.0 43200 < th dose dependent rect. 8 7
285 83.73 radiation 1.0 1440 < th dose dependent rect. 13 2
299 83.75 radiation 10.0 4320 > th dose dependent rect. 16 15
304 83.76 atmosphere 1005.0 1440 < th dose independent rect. 20 1
306 83.76 wind 5.0 43200 < th dose dependent rect. 8 1
310 83.77 radiation 1.0 1440 < th dose independent rect. 10 5
312 83.77 atmosphere 1005.0 270 < th dose independent rect. 16 11
317 83.77 radiation 1.0 1440 < th dose dependent rect. 10 5
341 83.80 wind 1.0 4320 < th dose dependent rect. 5 2
360 83.82 humidity 90.0 14400 > th dose dependent sin 2 NA
362 83.82 radiation 10.0 720 < th dose dependent rect. 14 4
418 83.90 atmosphere 1010.0 10 < th dose dependent rect. 17 11
422 83.91 temperature 10.0 90 > th dose dependent no NA NA
424 83.91 radiation 10.0 4320 > th dose dependent rect. 17 1
467 83.93 temperature 30.0 10 < th dose dependent rect. 9 23
476 83.94 radiation 10.0 14400 < th dose dependent rect. 18 1
480 83.94 temperature 15.0 270 > th dose dependent rect. 2 23
481 83.94 temperature 15.0 10 > th dose dependent rect. 23 23
493 83.96 humidity 90.0 270 > th dose dependent sin 16 NA
512 83.99 temperature 30.0 1440 < th dose dependent rect. 6 1
514 83.99 radiation 10.0 14400 < th dose dependent rect. 18 7
521 84.00 temperature 10.0 10 > th dose dependent no NA NA
526 84.00 radiation 10.0 14400 < th dose dependent rect. 18 4
529 84.01 wind 3.0 43200 > th dose independent rect. 8 1
530 84.01 humidity 90.0 14400 > th dose independent rect. 6 1
536 84.01 humidity 90.0 14400 > th dose independent rect. 2 14
543 84.02 atmosphere 1005.0 1440 > th dose independent rect. 20 1
561 84.03 wind 1.0 43200 > th dose dependent rect. 8 1
562 84.03 temperature 15.0 1440 > th dose dependent rect. 6 1
587 84.05 wind 3.0 43200 < th dose dependent rect. 6 3
589 84.06 temperature 20.0 1440 > th dose independent rect. 6 1
591 84.06 wind 3.0 43200 > th dose independent rect. 6 4
601 84.07 temperature 20.0 10 > th dose independent rect. 17 11
602 84.07 atmosphere 1005.0 10 < th dose independent rect. 18 11
620 84.09 wind 3.0 43200 < th dose independent rect. 8 1
628 84.09 humidity 90.0 14400 > th dose independent rect. 2 17
638 84.10 wind 3.0 43200 < th dose independent rect. 7 3
644 84.10 radiation 30.0 4320 < th dose independent rect. 16 16
645 84.10 atmosphere 995.0 43200 < th dose dependent sin 19 NA
652 84.10 temperature 30.0 10 < th dose dependent rect. 13 23
653 84.11 radiation 30.0 720 > th dose independent rect. 15 2
675 84.11 temperature 10.0 1440 > th dose dependent rect. 22 1
682 84.11 temperature 15.0 10 > th dose dependent rect. 13 23
686 84.12 humidity 90.0 14400 < th dose independent rect. 24 19
695 84.13 temperature 20.0 4320 > th dose independent sin 15 NA
709 84.13 temperature 30.0 10 < th dose dependent rect. 22 23
710 84.13 temperature 30.0 90 < th dose dependent rect. 22 23
724 84.14 temperature 30.0 10 < th dose dependent rect. 11 23
727 84.15 radiation 30.0 4320 < th dose independent rect. 21 11
747 84.16 humidity 60.0 43200 < th dose dependent rect. 6 2
758 84.17 humidity 80.0 14400 > th dose dependent rect. 2 7
761 84.17 temperature 30.0 10 < th dose dependent rect. 7 23
765 84.18 temperature 30.0 10 < th dose dependent no NA NA
772 84.18 temperature 30.0 90 < th dose dependent rect. 11 23
774 84.19 humidity 90.0 14400 > th dose independent rect. 10 1
776 84.19 radiation 30.0 4320 < th dose independent rect. 24 8
781 84.19 temperature 30.0 1440 < th dose dependent rect. 22 1
790 84.19 temperature 30.0 10 < th dose dependent rect. 15 23
791 84.20 temperature 20.0 4320 < th dose independent sin 15 NA
793 84.20 radiation 30.0 4320 < th dose independent rect. 4 4
798 84.20 humidity 90.0 14400 < th dose independent rect. 24 16
801 84.20 wind 1.0 43200 > th dose dependent rect. 6 4
812 84.21 humidity 90.0 14400 > th dose dependent rect. 18 1
823 84.22 radiation 10.0 4320 > th dose independent rect. 16 1
833 84.22 atmosphere 995.0 43200 < th dose independent rect. 22 16
845 84.22 temperature 15.0 10 > th dose dependent rect. 21 23
871 84.24 radiation 20.0 4320 > th dose dependent rect. 15 17
873 84.24 temperature 30.0 90 < th dose dependent rect. 19 23
874 84.25 radiation 30.0 4320 < th dose independent rect. 7 1
877 84.25 atmosphere 1005.0 270 < th dose independent rect. 21 5
884 84.25 wind 9.0 43200 < th dose dependent rect. 6 4
890 84.25 temperature 30.0 10 < th dose dependent rect. 19 23
911 84.26 temperature 30.0 90 < th dose dependent rect. 3 23
952 84.29 temperature 30.0 10 < th dose dependent rect. 4 23
972 84.30 temperature 15.0 270 > th dose dependent rect. 21 23
974 84.31 humidity 90.0 14400 > th dose independent sin 3 NA
975 84.31 temperature 20.0 4320 > th dose independent rect. 23 1
987 84.31 radiation 20.0 720 > th dose dependent rect. 15 17
989 84.31 temperature 30.0 90 < th dose dependent rect. 1 23
1000 84.32 wind 9.0 43200 > th dose independent rect. 20 18