BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0499300 Os01g0499300|AK102705
(518 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0499300 Mov34/MPN/PAD-1 family protein 1050 0.0
Os01g0338200 Mov34/MPN/PAD-1 family protein 694 0.0
Os01g0661500 Mov34/MPN/PAD-1 family protein 241 1e-63
Os09g0378100 180 3e-45
>Os01g0499300 Mov34/MPN/PAD-1 family protein
Length = 518
Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/518 (97%), Positives = 506/518 (97%)
Query: 1 MSMPSSRQAMGEINIEAMARPVSVDHRISIAYYFRIADNLLRQANIYREEKNLVDXXXXX 60
MSMPSSRQAMGEINIEAMARPVSVDHRISIAYYFRIADNLLRQANIYREEKNLVD
Sbjct: 1 MSMPSSRQAMGEINIEAMARPVSVDHRISIAYYFRIADNLLRQANIYREEKNLVDLYIIL 60
Query: 61 XXXXXXXCETIPKHRDYHAFKLREKEFLKKGPHNSDKLLNVVNELETLKPVVLRQIADLN 120
CETIPKHRDYHAFKLREKEFLKKGPHNSDKLLNVVNELETLKPVVLRQIADLN
Sbjct: 61 LRYSSLLCETIPKHRDYHAFKLREKEFLKKGPHNSDKLLNVVNELETLKPVVLRQIADLN 120
Query: 121 RGVTQEPNSQSGTSAAISQMDHLTQSSCFTQPLVGSPTGLLKMPFSGGKHQVEPTQSGRP 180
RGVTQEPNSQSGTSAAISQMDHLTQSSCFTQPLVGSPTGLLKMPFSGGKHQVEPTQSGRP
Sbjct: 121 RGVTQEPNSQSGTSAAISQMDHLTQSSCFTQPLVGSPTGLLKMPFSGGKHQVEPTQSGRP 180
Query: 181 DSQLVKSYGNLPYPKEETLSRHSVLGPNGLHGKWTAPVTGIRIQYPSNAELTKSDVSSLV 240
DSQLVKSYGNLPYPKEETLSRHSVLGPNGLHGKWTAPVTGIRIQYPSNAELTKSDVSSLV
Sbjct: 181 DSQLVKSYGNLPYPKEETLSRHSVLGPNGLHGKWTAPVTGIRIQYPSNAELTKSDVSSLV 240
Query: 241 PSILNQDLLYGPSRSQDFPTNKNEDMQSVLSLDDGQLSLPVEEATSVSPGFEEEFSQLNI 300
PSILNQDLLYGPSRSQDFPTNKNEDMQSVLSLDDGQLSLPVEEATSVSPGFEEEFSQLNI
Sbjct: 241 PSILNQDLLYGPSRSQDFPTNKNEDMQSVLSLDDGQLSLPVEEATSVSPGFEEEFSQLNI 300
Query: 301 RQPSPPPVMAQVHPQHRAISTSTVADLGPGIASSSTGRYQNLHVPVTLMECFLRVAEANT 360
RQPSPPPVMAQVHPQHRAISTSTVADLGPGIASSSTGRYQNLHVPVTLMECFLRVAEANT
Sbjct: 301 RQPSPPPVMAQVHPQHRAISTSTVADLGPGIASSSTGRYQNLHVPVTLMECFLRVAEANT 360
Query: 361 ANNLETCGILAGTLKKRTFYVTTLIIPKQRSTSDSCQATNEEEIFEVQDKGSLFTLGWIH 420
ANNLETCGILAGTLKKRTFYVTTLIIPKQRSTSDSCQATNEEEIFEVQDKGSLFTLGWIH
Sbjct: 361 ANNLETCGILAGTLKKRTFYVTTLIIPKQRSTSDSCQATNEEEIFEVQDKGSLFTLGWIH 420
Query: 421 THPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTTRKHGIFHLTDPGGMGVIHDCQE 480
THPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTTRKHGIFHLTDPGGMGVIHDCQE
Sbjct: 421 THPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTTRKHGIFHLTDPGGMGVIHDCQE 480
Query: 481 SGFHPHEEPLDGTSIYEHCSHVYMNPNVKFDMVDLREL 518
SGFHPHEEPLDGTSIYEHCSHVYMNPNVKFDMVDLREL
Sbjct: 481 SGFHPHEEPLDGTSIYEHCSHVYMNPNVKFDMVDLREL 518
>Os01g0338200 Mov34/MPN/PAD-1 family protein
Length = 517
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/518 (66%), Positives = 399/518 (77%), Gaps = 8/518 (1%)
Query: 4 PSSRQAMGEINIEAMARPVSVDHRISIAYYFRIADNLLRQANIYREEKNLVDXXXXXXXX 63
P + G I+IEA ARP++VDHRI + YYFRIA NLLRQA IYR+E NLVD
Sbjct: 3 PPQQARGGGIDIEACARPIAVDHRIKLPYYFRIAGNLLRQAKIYRDENNLVDLYVILLRY 62
Query: 64 XXXXCETIPKHRDYHAFKLREKEFLKKGPHNSDKLLNVVNELETLKPVVLRQIADLNR-- 121
CETIPKHRDYH FKLRE +F + PHN KL+ V++ELE+LKPVV RQI + NR
Sbjct: 63 SSLVCETIPKHRDYHTFKLREVDFFRLAPHNQSKLIEVLSELESLKPVVQRQITEHNRAR 122
Query: 122 GVTQEPNSQSGTSAAIS-QMDHLTQSSCFTQPLVGSPTGLLKMPFSGGKHQVEPTQSGRP 180
G E NS +GT A + H+T + QP VGS G + P GG HQ+ P S +P
Sbjct: 123 GGAIESNSINGTIAVNNITKQHMTNPYTY-QPFVGSNNGSFERPVPGGNHQMAPLMSAQP 181
Query: 181 DSQLVKSYGNLPYPKEETLSRHSVLGPNGLHGKWTAPVTGIRIQYPSNAELTKSDVSSLV 240
D K NLP+PKEETL+RHS+LGPNGLHG+WT PVT I++QYPSN ++ KSDVSSL
Sbjct: 182 DRLTRKQLANLPFPKEETLARHSILGPNGLHGQWTGPVTAIKVQYPSNLDIIKSDVSSLF 241
Query: 241 PSILNQDLLYGPSR-SQDFPTNKNEDMQSVLSLDDGQLSLPVEEATSV-SPGFEEEFSQL 298
PS+LNQD GPS S D +N+DM+SVLSLDDG+ S EE SV S EEE SQL
Sbjct: 242 PSVLNQDGQNGPSTISTDSTQIENDDMKSVLSLDDGRWSKLAEECASVPSVSLEEELSQL 301
Query: 299 NIRQPSPPPVMAQVHPQHRAISTSTVADLGPGIASSSTGRYQNLHVPVTLMECFLRVAEA 358
+I+QPSPPPV+A++ + R I+ S VAD PG+A S TGRYQNLHVPV LMECFLRVAEA
Sbjct: 302 SIKQPSPPPVLAEL--ERRPIAPSEVADPTPGLAVSETGRYQNLHVPVKLMECFLRVAEA 359
Query: 359 NTANNLETCGILAGTLKKRTFYVTTLIIPKQRSTSDSCQATNEEEIFEVQDKGSLFTLGW 418
NT +LETCG+LAGTLKKRTFYVT LIIPKQ+STSDSC+ATNE+E+F+VQDKGSLFTLGW
Sbjct: 360 NTKRSLETCGVLAGTLKKRTFYVTALIIPKQKSTSDSCEATNEDELFDVQDKGSLFTLGW 419
Query: 419 IHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTTRKHGIFHLTDPGGMGVIHDC 478
IHTHPTQ+CFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT RKHGIFHL+DPGGMGVIHDC
Sbjct: 420 IHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRRKHGIFHLSDPGGMGVIHDC 479
Query: 479 QESGFHPHEEPLDGTSIYEHCSHVYMNPNVKFDMVDLR 516
E GFHPH+ PLDG+ IYEHCSHVYMNP+VKFD++DLR
Sbjct: 480 PERGFHPHKAPLDGSPIYEHCSHVYMNPDVKFDVIDLR 517
>Os01g0661500 Mov34/MPN/PAD-1 family protein
Length = 287
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 110/184 (59%), Positives = 138/184 (75%)
Query: 333 SSSTGRYQNLHVPVTLMECFLRVAEANTANNLETCGILAGTLKKRTFYVTTLIIPKQRST 392
SS++ ++ + V L + F+ +A+ NT NN+ETCGIL + + T+YVT LIIPKQ +T
Sbjct: 101 SSASVNLHDMQISVRLTDEFIELAKENTGNNVETCGILGASFRDGTYYVTMLIIPKQEAT 160
Query: 393 SDSCQATNEEEIFEVQDKGSLFTLGWIHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVM 452
+ SCQA +EEEI + + SL+ GWIHTHP+QTCFLSSIDLH YSYQVMLPEA+AIV+
Sbjct: 161 AHSCQAVSEEEIHAILSEQSLYPAGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVI 220
Query: 453 APTDTTRKHGIFHLTDPGGMGVIHDCQESGFHPHEEPLDGTSIYEHCSHVYMNPNVKFDM 512
APTD TR GIF LTDPGGMGV+ +C ESGFH H E DG IYE CS V NPN++F++
Sbjct: 221 APTDPTRNCGIFRLTDPGGMGVLRECSESGFHAHRETTDGGPIYETCSKVIFNPNLRFEI 280
Query: 513 VDLR 516
VDLR
Sbjct: 281 VDLR 284
>Os09g0378100
Length = 450
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 128/196 (65%), Gaps = 15/196 (7%)
Query: 328 GPGIASSSTGRYQNLHVPVTLMECFLRVAEANTANNLETCGILAGTLKK----RTFYVTT 383
G GI+ S Y+ ++VP L+ FL A NT +LETCGI+AGTL+ + F T
Sbjct: 263 GHGISDCSP--YRMVYVPEELISRFLNEAVENTTKSLETCGIIAGTLRVDMDVKYFIATD 320
Query: 384 LIIPKQRSTSDSCQATNEEEIFEVQDK-GSLFTLGWIHTHPTQTCFLSSIDLHNHYSYQV 442
LIIPKQ STS S +ATNEEEI ++ ++ GS LGWIHTHPTQ CF+SS+DLHNHYS Q
Sbjct: 321 LIIPKQESTSYSREATNEEEILDIFEQLGSPSHLGWIHTHPTQECFMSSVDLHNHYSNQK 380
Query: 443 MLPEAIAIVMAPTDTTRKHGIFHLTDPGGMGVIHDCQESGFHPHEEPLDGTSIYEHCSHV 502
L EA AIV+AP + R+ IFHLT P GM I DC + GFHPH+ + YE CSHV
Sbjct: 381 DLREAFAIVVAP--SKREQNIFHLTVPDGMDEIGDCDDRGFHPHDR-----TTYEECSHV 433
Query: 503 YMNPNVKF-DMVDLRE 517
+ + ++VDLRE
Sbjct: 434 KWDSTISLHNVVDLRE 449
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,869,974
Number of extensions: 774282
Number of successful extensions: 1954
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1946
Number of HSP's successfully gapped: 4
Length of query: 518
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 413
Effective length of database: 11,553,331
Effective search space: 4771525703
Effective search space used: 4771525703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)