BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0382700 Os01g0382700|AK071607
         (346 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0382700  Conserved hypothetical protein                      605   e-173
Os02g0169000  Conserved hypothetical protein                      100   2e-21
Os04g0639300  Conserved hypothetical protein                       78   1e-14

>Os01g0382700 Conserved hypothetical protein
          Length = 346

 Score =  605 bits (1559), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 304/346 (87%), Positives = 304/346 (87%)

Query: 1   MMRLGRAPCCYCFTEPHXXXXXXXXXXXXXXXXXXXXNTSSEPAARLRAVLEQVDEELRK 60
           MMRLGRAPCCYCFTEPH                    NTSSEPAARLRAVLEQVDEELRK
Sbjct: 1   MMRLGRAPCCYCFTEPHPAGGVAAAVRLRLLPPARAANTSSEPAARLRAVLEQVDEELRK 60

Query: 61  GNDEAALSLVRGSQGADGGLRFFGAARQVPQRLYTLDELKLNGIDTSAFLSPVDLTLGSI 120
           GNDEAALSLVRGSQGADGGLRFFGAARQVPQRLYTLDELKLNGIDTSAFLSPVDLTLGSI
Sbjct: 61  GNDEAALSLVRGSQGADGGLRFFGAARQVPQRLYTLDELKLNGIDTSAFLSPVDLTLGSI 120

Query: 121 ERNLQIAAVLGGLSVSAAFEXXXXXXXXXXXXXXXXXXXXXXYFGGGVRNLILDTIGHNL 180
           ERNLQIAAVLGGLSVSAAFE                      YFGGGVRNLILDTIGHNL
Sbjct: 121 ERNLQIAAVLGGLSVSAAFELSKLQVLFLFLGLLSLWSVDLVYFGGGVRNLILDTIGHNL 180

Query: 181 SQKYRNRVIQHEAGHFLIAYLLGVLPKGYTITSLDTFIKKGSLNVQAGTAFVDFEFLQEV 240
           SQKYRNRVIQHEAGHFLIAYLLGVLPKGYTITSLDTFIKKGSLNVQAGTAFVDFEFLQEV
Sbjct: 181 SQKYRNRVIQHEAGHFLIAYLLGVLPKGYTITSLDTFIKKGSLNVQAGTAFVDFEFLQEV 240

Query: 241 NSGKLSATMLNKFSCIALAGVATEYLLYGYAEGGLADIGQLDGLLKGLGFTQKKADSQVR 300
           NSGKLSATMLNKFSCIALAGVATEYLLYGYAEGGLADIGQLDGLLKGLGFTQKKADSQVR
Sbjct: 241 NSGKLSATMLNKFSCIALAGVATEYLLYGYAEGGLADIGQLDGLLKGLGFTQKKADSQVR 300

Query: 301 WAVLNTVPALRRHKKARSQLAEAMSSGKSVGSCIGVIEENINSEDI 346
           WAVLNTVPALRRHKKARSQLAEAMSSGKSVGSCIGVIEENINSEDI
Sbjct: 301 WAVLNTVPALRRHKKARSQLAEAMSSGKSVGSCIGVIEENINSEDI 346



>Os02g0169000 Conserved hypothetical protein
          Length = 387

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 6/165 (3%)

Query: 183 KYRNRVIQHEAGHFLIAYLLGVLPKGYTITSLDTFIK-KGSLNVQAGTAFVDFEFLQEVN 241
            Y+ R++ HEAGH L AYL+G   +G     LD F+  +  +  QAGT F D +  +E+ 
Sbjct: 225 PYKRRILVHEAGHLLTAYLMGCPIRGVI---LDPFVALRMGIQGQAGTQFWDEKMEKELA 281

Query: 242 SGKLSATMLNKFSCIALAGVATEYLLYGYAEGGLADIGQLDGL--LKGLGFTQKKADSQV 299
            G LS+T  +++  I  AG+A E L+YG AEGG  D      L  L     +  +  ++ 
Sbjct: 282 EGHLSSTAFDRYCMILFAGIAAEALVYGEAEGGENDENLFRSLCILLDPPLSVAQMANRA 341

Query: 300 RWAVLNTVPALRRHKKARSQLAEAMSSGKSVGSCIGVIEENINSE 344
           RW+V+ +   L+ HKKA     +A+ SG S+ + I  IEE I+S+
Sbjct: 342 RWSVMQSYNLLKWHKKAHRAAVKALESGHSLSTVIRRIEEAISSD 386



>Os04g0639300 Conserved hypothetical protein
          Length = 173

 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 13/157 (8%)

Query: 184 YRNRVIQHEAGHFLIAYLLGVLPKGYTITSLDTFIKKGSLNVQAGTAFVDFEFLQEVNSG 243
           Y+ R+ +HEA HFL+AYL+G+   GY   SLD  I K  +N+      +D +  + + SG
Sbjct: 25  YQERIARHEAAHFLVAYLIGLPILGY---SLD--IGKEHVNL------IDDQLQKLIYSG 73

Query: 244 KLSATMLNKFSCIALAGVATEYLLYGYAEGGLADIGQLDGLLKGLG--FTQKKADSQVRW 301
           +L    +++ + +++AG+A E L Y    G  AD+  L   +       T+ +  +  RW
Sbjct: 74  QLDQKEIDRLAVVSMAGLAAEGLEYDKVVGQSADLFTLQRFINRTKPPLTKDQQQNLTRW 133

Query: 302 AVLNTVPALRRHKKARSQLAEAMSSGKSVGSCIGVIE 338
           AVL +   L+ +K A   L  AMS   SV  CI  IE
Sbjct: 134 AVLFSASLLKNNKAAHEALMSAMSQKASVLGCIEAIE 170



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,341,006
Number of extensions: 338603
Number of successful extensions: 815
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 3
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)