Os01g0382700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0382700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.09 | 0.41 | 11.5 | -1.9 | 1.4 | 1.69 | -0.201 | -0.512 | -0.514 | 0.745 | 16.86 | 521 | -- | -- |
| 76.29 | 0.407 | 11.5 | -1.8 | 1.4 | 1.68 | -0.217 | -- | -0.487 | 0.737 | 16.7 | 520 | -- | -- |
| 76.26 | 0.407 | 11.5 | -1.89 | 1.4 | 1.7 | -- | -0.538 | -0.515 | 0.742 | 16.79 | 520 | -- | -- |
| 76.49 | 0.407 | 11.5 | -1.79 | 1.41 | 1.68 | -- | -- | -0.484 | 0.738 | 16.64 | 516 | -- | -- |
| 156.54 | 0.583 | 11.6 | -2.16 | -- | 2.26 | -- | -0.748 | -0.62 | -- | 17.1 | 882 | -- | -- |
| 116.21 | 0.505 | 11.5 | -1.38 | 1.5 | -- | -0.178 | -- | -0.211 | 23.4 | -- | -- | -- | -- |
| 116.35 | 0.505 | 11.5 | -1.38 | 1.5 | -- | -- | -- | -0.21 | 23.4 | -- | -- | -- | -- |
| 157.14 | 0.584 | 11.5 | -2 | -- | 2.27 | -- | -- | -0.593 | -- | 16.6 | 872 | -- | -- |
| 149.48 | 0.569 | 11.5 | -- | 1.48 | 0.922 | -- | -- | -0.192 | 0.295 | 21.2 | 393 | -- | -- |
| 256.99 | 0.749 | 11.4 | -1.34 | -- | -- | -- | -- | -0.194 | -- | -- | -- | -- | -- |
| 166.33 | 0.603 | 11.4 | -- | 1.48 | -- | -- | -- | -0.0564 | 23.4 | -- | -- | -- | -- |
| 247.83 | 0.733 | 11.5 | -- | -- | 1.37 | -- | -- | -0.256 | -- | 21.3 | 858 | -- | -- |
| 304.2 | 0.814 | 11.4 | -- | -- | -- | -- | -- | -0.046 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 7 | 76.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 8 | 76.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 9 | 76.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 12 | 76.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 21 | 76.50 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 24 | 76.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 28 | 76.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 55 | 76.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 61 | 77.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 64 | 77.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 89 | 77.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 105 | 77.57 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 138 | 77.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 147 | 77.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 177 | 78.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 181 | 78.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 195 | 78.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 227 | 78.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 236 | 78.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 241 | 78.52 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 256 | 78.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 258 | 78.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 13 |
| 315 | 78.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 372 | 78.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 422 | 79.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 445 | 79.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 467 | 79.08 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 475 | 79.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 493 | 79.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 584 | 79.23 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 604 | 79.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 614 | 79.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 18 |