Os02g0169000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0169000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.06 | 0.493 | 10.6 | -0.347 | 0.743 | 1.28 | -0.332 | 0.312 | -0.542 | 21.4 | 23.22 | 20 | -- | -- |
| 110.1 | 0.489 | 10.6 | -0.39 | 0.747 | 1.31 | -0.37 | -- | -0.554 | 21.5 | 23.29 | 18 | -- | -- |
| 110.42 | 0.489 | 10.6 | -0.321 | 0.741 | 1.28 | -- | 0.462 | -0.536 | 21.4 | 23.2 | 18 | -- | -- |
| 110.57 | 0.49 | 10.6 | -0.383 | 0.747 | 1.32 | -- | -- | -0.557 | 21.5 | 23.26 | 18 | -- | -- |
| 126.22 | 0.523 | 10.6 | -0.296 | -- | 1.25 | -- | 0.601 | -0.514 | -- | 23.44 | 362 | -- | -- |
| 137.74 | 0.55 | 10.6 | -0.142 | 0.838 | -- | -0.29 | -- | -0.364 | 19 | -- | -- | -- | -- |
| 137.96 | 0.55 | 10.6 | -0.136 | 0.838 | -- | -- | -- | -0.365 | 19 | -- | -- | -- | -- |
| 126.38 | 0.524 | 10.6 | -0.396 | -- | 1.3 | -- | -- | -0.545 | -- | 23.38 | 360 | -- | -- |
| 114.15 | 0.498 | 10.6 | -- | 0.735 | 1.22 | -- | -- | -0.493 | 21.3 | 23.6 | 18 | -- | -- |
| 174.82 | 0.618 | 10.5 | -0.153 | -- | -- | -- | -- | -0.38 | -- | -- | -- | -- | -- |
| 138.45 | 0.55 | 10.6 | -- | 0.839 | -- | -- | -- | -0.35 | 19 | -- | -- | -- | -- |
| 130.31 | 0.532 | 10.6 | -- | -- | 1.23 | -- | -- | -0.468 | -- | 24.09 | 356 | -- | -- |
| 175.44 | 0.618 | 10.5 | -- | -- | -- | -- | -- | -0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.92 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 6 | 107.43 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 17 | 109.26 | temperature | 20.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 28 | 109.72 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 30 | 109.81 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 18 |
| 31 | 109.86 | temperature | 20.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 44 | 110.32 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 48 | 110.37 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 52 | 110.42 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 62 | 110.57 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 93 | 110.99 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 108 | 111.20 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 109 | 111.20 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 113 | 111.24 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 142 | 111.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 186 | 111.73 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 189 | 111.74 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 198 | 111.77 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 200 | 111.78 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 6 |
| 232 | 111.89 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 263 | 112.02 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 296 | 112.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 310 | 112.24 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 326 | 112.30 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 355 | 112.36 | temperature | 30.0 | 720 | > th | dose independent | sin | 5 | NA |
| 385 | 112.48 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 393 | 112.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 529 | 113.15 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 568 | 113.34 | temperature | 30.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 587 | 113.43 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 612 | 113.47 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 618 | 113.51 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 700 | 113.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 707 | 113.85 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 8 |
| 735 | 113.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 745 | 113.97 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 753 | 114.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 758 | 114.04 | temperature | 30.0 | 720 | < th | dose independent | sin | 23 | NA |
| 766 | 114.07 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 22 |
| 770 | 114.08 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 808 | 114.19 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 815 | 114.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 837 | 114.30 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 869 | 114.39 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 902 | 114.50 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 950 | 114.66 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 957 | 114.68 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 23 |