BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0340600 Os01g0340600|Os01g0340600
(281 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0340600 Conserved hypothetical protein 343 5e-95
Os01g0341000 TMP repeat containing protein 88 6e-18
Os01g0341200 Conserved hypothetical protein 82 4e-16
>Os01g0340600 Conserved hypothetical protein
Length = 281
Score = 343 bits (881), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 202/281 (71%), Positives = 202/281 (71%)
Query: 1 MAVLADSAARKLLHGASAQGVAAGMSLGLDGLLQLVADLFASLVHLFVLPFRAMGHAIQW 60
MAVLADSAARKLLHGASAQGVAAGMSLGLDGLLQLVADLFASLVHLFVLPFRAMGHAIQW
Sbjct: 1 MAVLADSAARKLLHGASAQGVAAGMSLGLDGLLQLVADLFASLVHLFVLPFRAMGHAIQW 60
Query: 61 FFXXXXXXXXXXXXXXXXXXETLSRWLQAAVAGIASAAHLLVLPFEAFWRWLRDXXXXXX 120
FF ETLSRWLQAAVAGIASAAHLLVLPFEAFWRWLRD
Sbjct: 61 FFAGVVAGLGGAARVLVLPLETLSRWLQAAVAGIASAAHLLVLPFEAFWRWLRDAAAAAL 120
Query: 121 XXXXXXXXXXXXXXXXWLSCTFLCSXXXXXXXXXXXXXXSCGAFLLPAAVRTGQALVYAV 180
WLSCTFLCS SCGAFLLPAAVRTGQALVYAV
Sbjct: 121 PYVLAIVAVVCVVALLWLSCTFLCSAAALIGPPLAGAAISCGAFLLPAAVRTGQALVYAV 180
Query: 181 CYAARGAGVVLAWVLPRCGRCCVVLVTMKAPGAAGMVISRGAFESLPRLYFLPDTALXXX 240
CYAARGAGVVLAWVLPRCGRCCVVLVTMKAPGAAGMVISRGAFESLPRLYFLPDTAL
Sbjct: 181 CYAARGAGVVLAWVLPRCGRCCVVLVTMKAPGAAGMVISRGAFESLPRLYFLPDTALRWR 240
Query: 241 XXXXXXXXXXXXXXXXXXXXXXPLPRVVINKLLSVLVAGNA 281
PLPRVVINKLLSVLVAGNA
Sbjct: 241 RRGRRRVLRAARRVGVRCAGRRPLPRVVINKLLSVLVAGNA 281
>Os01g0341000 TMP repeat containing protein
Length = 571
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 73/152 (48%), Gaps = 39/152 (25%)
Query: 1 MAVLADSAARKLLHGAS------AQGVAAGMSLGLDGLLQLVADLFASLVHLFVLPFR-- 52
M VLADSAARKLLHGA A A GMS GLDGL QL+A LF L+HL +LPF+
Sbjct: 1 MVVLADSAARKLLHGAVGRARTLAGDAAVGMSFGLDGLWQLIAGLFGGLIHLLLLPFQAL 60
Query: 53 ---------AMGHAIQWFFXXXXXXXXXXXXXXXXXXETLSRWLQAAVAGI--------- 94
A+GHAIQW E L R +QAAVAGI
Sbjct: 61 AGAIAHVFEALGHAIQWLLAGVVAGLGSLVHLLVMPFEMLWRGVQAAVAGIGHGFESLGH 120
Query: 95 -------------ASAAHLLVLPFEAFWRWLR 113
S AHLLVLPFE WR L+
Sbjct: 121 AVQVFFAGIVAGLGSLAHLLVLPFEMLWRGLQ 152
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 89/222 (40%), Gaps = 39/222 (17%)
Query: 17 SAQGVAAGMSLGLDGLLQLVADLFASLV-------HLFVLPFRAMGHAIQWFFXXXXXXX 69
+A A G+S G DG Q FAS++ H V PF A +W
Sbjct: 346 AAADAATGISFGFDGFWQNTRSFFASVLATLAGAAHELVQPFEAF---WKWLKTAAADAA 402
Query: 70 XXXXXXXXXXXETLSRWLQAAVAGIASAAHLLVLPFEAFWRWLRDXXXXXXXXXXXXXXX 129
+ R + +A +A AAH L E+FWRWLR
Sbjct: 403 ADISFRLDGLWPLVKRLYASLLATLAGAAHELAPRLESFWRWLRAAAGAALPYVLVIAAV 462
Query: 130 XXXXXXXWLSCTFLCSXXXXXXXXXXXXXXSCGAFLLPAAVRTGQALVYAVCYAARGAGV 189
WLS FLL AAV+ GQALV AV A
Sbjct: 463 LCVAALVWLSWP----------------------FLLHAAVQIGQALVSAVSSGAH---- 496
Query: 190 VLAWVLPRCGRCCVVLVTMKAPGAAGMVISRGAFESLPRLYF 231
++ G+CCV L M+APGAAG++ISR AFESLP LYF
Sbjct: 497 ---YLFVPFGQCCVPLTMMRAPGAAGLMISRAAFESLPELYF 535
>Os01g0341200 Conserved hypothetical protein
Length = 472
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 91/228 (39%), Gaps = 19/228 (8%)
Query: 19 QGVAAGMSLGLDGLLQLVADLFASLV---HLFVLPFRAMGHAIQWFFXXXXXXXXXXXXX 75
Q A G G GL Q V FA+L H V PF A +W
Sbjct: 130 QTAAGGTGSGFQGLWQNVLAFFATLAGAAHDLVHPFEAFW---KWLRTAAADAAADISFR 186
Query: 76 XXXXXETLSRWLQAAVAGIASAAHLLVLPFEAFWRWLRDXXXXXXXXXXXXXXXXXXXXX 135
+ R + +A +ASAAH LV E+ WR LR
Sbjct: 187 LDGLWPLVKRLYASLLATLASAAHGLVPLLESLWRGLRAAAAAALPYVLVIAAVLCVVAL 246
Query: 136 XWLSCTFLCSXXXXXXXXXXXXXXSCGAFLLPAAVRTGQALVYAVCY-------AARGAG 188
WL+ FL C LL AAV G+ALVYAVC+ AA+ G
Sbjct: 247 VWLAWPFLFPAAAVIGLALVGVAGCCAFLLLAAAVLIGRALVYAVCFGVVLLFVAAKVVG 306
Query: 189 VVLAWVLPRCGRCC------VVLVTMKAPGAAGMVISRGAFESLPRLY 230
VL VLP C RCC TM AP AAGM ISR A+ESLP LY
Sbjct: 307 KVLDRVLPACARCCYDDRVTTTATTMSAPDAAGMDISRAAYESLPELY 354
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 71/173 (41%), Gaps = 60/173 (34%)
Query: 1 MAVLADSAARK--LLHGASAQGVAAGMSLGLDGLLQLVADLFASLVHLFVLPFRA----- 53
M LADSAA + LLHGA+ A GMS GLDGL QL+A LF+ LVHL +LPF+A
Sbjct: 1 MVALADSAAARKLLLHGAATDAAAVGMSFGLDGLWQLIAGLFSGLVHLLLLPFQAIAHGF 60
Query: 54 -----------------------------------MGHAIQWFFXXXXXXXXXXXXXXXX 78
M HAIQ FF
Sbjct: 61 QALGHAIQALFAGLGTVAHLLVQAAVAGIGHGFDGMWHAIQGFFASIVAALAGAAHGLVL 120
Query: 79 XXETLSRWLQAAVAG------------------IASAAHLLVLPFEAFWRWLR 113
E RWLQ A G +A AAH LV PFEAFW+WLR
Sbjct: 121 PFEAFWRWLQTAAGGTGSGFQGLWQNVLAFFATLAGAAHDLVHPFEAFWKWLR 173
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.139 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,529,021
Number of extensions: 193191
Number of successful extensions: 741
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 5
Length of query: 281
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 181
Effective length of database: 11,814,401
Effective search space: 2138406581
Effective search space used: 2138406581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 155 (64.3 bits)