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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0340600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.36 (0.0441) R2 : 0.207
β1 : 0.924 (0.168) R2dD : 0.0622 R2D : -0.00497
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.02 (0.201) R2dE : 0.23 R2E : 0.145
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.102) R2dN8 : 0.0063 R2N8 : -0.026
σ : 0.804
deviance : 298.2
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.61
memory length : 825
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
294.51 0.806 4.38 0.783 0.258 1.99 -0.0808 0.671 0.095 13.8 24.94 721 -- --
295.07 0.8 4.37 0.891 0.252 1.92 0.0457 -- 0.118 13.6 25.02 729 -- --
294.52 0.799 4.38 0.783 0.258 1.99 -- 0.66 0.0942 13.6 24.91 720 -- --
295.08 0.8 4.37 0.895 0.255 1.92 -- -- 0.118 13.6 25 728 -- --
297.67 0.804 4.38 0.809 -- 2.08 -- 0.654 0.118 -- 25.17 813 -- --
349.56 0.877 4.45 0.346 0.48 -- 0.231 -- -0.284 11.6 -- -- -- --
349.77 0.876 4.45 0.356 0.479 -- -- -- -0.283 11.8 -- -- -- --
298.2 0.804 4.36 0.924 -- 2.02 -- -- 0.151 -- 25.61 825 -- --
313.84 0.825 4.39 -- 0.412 1.52 -- -- -0.0174 13.5 25.22 500 -- --
364.21 0.892 4.46 0.342 -- -- -- -- -0.289 -- -- -- -- --
353.1 0.879 4.46 -- 0.475 -- -- -- -0.322 11.7 -- -- -- --
317.93 0.83 4.4 -- -- 1.63 -- -- -0.0221 -- 25.67 789 -- --
367.28 0.895 4.47 -- -- -- -- -- -0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.05 wind 9 43200 > th dose dependent rect. 17 13
3 285.52 wind 9 43200 > th dose dependent rect. 17 7
4 285.65 wind 9 43200 > th dose dependent rect. 17 9
6 285.74 wind 9 43200 > th dose independent rect. 17 13
12 286.21 wind 9 43200 > th dose independent rect. 17 7
30 287.27 wind 9 43200 < th dose independent rect. 17 8
31 287.37 wind 7 43200 < th dose independent rect. 20 1
37 287.53 wind 9 43200 < th dose independent rect. 17 13
49 288.25 wind 7 43200 > th dose independent rect. 20 1
50 288.31 wind 7 43200 > th dose independent rect. 18 3
62 288.64 wind 5 43200 > th dose dependent rect. 20 1
69 288.96 wind 9 43200 > th dose dependent rect. 20 3
166 291.29 temperature 10 720 > th dose dependent rect. 19 21
172 291.40 wind 9 43200 > th dose dependent rect. 20 10
181 291.55 temperature 30 30 < th dose dependent rect. 7 23
263 292.71 wind 7 43200 > th dose dependent sin 13 NA
267 292.82 wind 7 43200 > th dose independent sin 12 NA
286 292.97 wind 9 43200 < th dose independent sin 13 NA
289 292.99 temperature 10 720 > th dose dependent rect. 19 14
299 293.14 wind 9 43200 > th dose dependent rect. 14 17
337 293.62 temperature 10 270 > th dose dependent rect. 1 23
371 294.09 temperature 30 720 < th dose dependent rect. 16 19
376 294.23 temperature 25 720 < th dose dependent rect. 1 22
384 294.28 temperature 25 720 < th dose dependent rect. 6 23
394 294.35 temperature 25 720 < th dose dependent rect. 9 23
407 294.41 temperature 25 720 < th dose dependent rect. 17 23
425 294.48 temperature 25 720 < th dose dependent rect. 13 23
427 294.51 temperature 25 720 < th dose dependent no NA NA
495 294.94 temperature 25 720 < th dose dependent rect. 19 23
516 295.10 temperature 25 1440 < th dose dependent rect. 17 5
529 295.21 radiation 10 4320 > th dose dependent rect. 16 15
562 295.47 temperature 25 4320 < th dose independent rect. 21 1
571 295.55 wind 9 43200 > th dose independent rect. 14 18
576 295.59 wind 9 43200 < th dose independent rect. 14 18
579 295.64 temperature 10 4320 > th dose dependent rect. 21 1
580 295.64 temperature 30 4320 < th dose dependent rect. 21 1
602 295.78 temperature 30 4320 < th dose dependent rect. 17 9
620 295.87 temperature 10 4320 > th dose dependent rect. 17 9
680 296.15 temperature 25 4320 > th dose independent rect. 21 1
695 296.20 temperature 25 1440 < th dose dependent sin 16 NA
704 296.22 temperature 10 720 > th dose dependent rect. 12 19
726 296.33 humidity 60 14400 < th dose independent rect. 18 1
736 296.36 temperature 10 720 > th dose dependent rect. 11 22
764 296.44 temperature 10 720 > th dose dependent sin 10 NA
780 296.47 temperature 30 30 < th dose dependent rect. 9 23
813 296.56 temperature 30 4320 < th dose dependent rect. 17 1
835 296.61 temperature 25 1440 < th dose dependent rect. 11 18
839 296.63 humidity 60 14400 > th dose independent rect. 18 12
844 296.64 humidity 60 14400 < th dose independent rect. 18 14
865 296.71 humidity 60 14400 > th dose independent rect. 18 2
871 296.72 temperature 10 4320 > th dose dependent sin 14 NA
890 296.74 humidity 50 14400 > th dose independent rect. 17 16
894 296.75 humidity 60 14400 < th dose independent rect. 18 4
908 296.76 temperature 30 720 < th dose dependent sin 10 NA
951 296.87 humidity 60 14400 > th dose independent rect. 18 6