Os01g0341000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TMP repeat containing protein.
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Os01g0341000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TMP repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.95 | 0.577 | 7.38 | 1.55 | 1.14 | 2.07 | 0.597 | -0.388 | 0.0274 | 8.37 | 22.21 | 2049 | -- | -- |
| 151.07 | 0.572 | 7.4 | 1.45 | 1.16 | 2.11 | 0.583 | -- | -0.00846 | 8.42 | 22.18 | 1969 | -- | -- |
| 152.04 | 0.574 | 7.39 | 1.54 | 1.14 | 2.07 | -- | -0.305 | 0.0206 | 8.4 | 22.21 | 2045 | -- | -- |
| 152.09 | 0.574 | 7.4 | 1.46 | 1.16 | 2.1 | -- | -- | -0.0157 | 8.49 | 22.16 | 1975 | -- | -- |
| 222.9 | 0.695 | 7.4 | 1.62 | -- | 2.2 | -- | -0.313 | 0.0854 | -- | 22.3 | 2193 | -- | -- |
| 308.43 | 0.823 | 7.56 | 0.582 | 1.26 | -- | 0.573 | -- | -0.733 | 8.58 | -- | -- | -- | -- |
| 309.49 | 0.824 | 7.56 | 0.601 | 1.26 | -- | -- | -- | -0.732 | 8.62 | -- | -- | -- | -- |
| 222.84 | 0.695 | 7.42 | 1.54 | -- | 2.23 | -- | -- | 0.0454 | -- | 22.1 | 2139 | -- | -- |
| 195.77 | 0.652 | 7.45 | -- | 1.28 | 1.74 | -- | -- | -0.269 | 8.17 | 22.3 | 1383 | -- | -- |
| 399.21 | 0.934 | 7.59 | 0.604 | -- | -- | -- | -- | -0.721 | -- | -- | -- | -- | -- |
| 318.99 | 0.835 | 7.57 | -- | 1.26 | -- | -- | -- | -0.799 | 8.59 | -- | -- | -- | -- |
| 244.13 | 0.728 | 7.49 | -- | -- | 1.78 | -- | -- | -0.245 | -- | 22.4 | 739 | -- | -- |
| 408.85 | 0.944 | 7.61 | -- | -- | -- | -- | -- | -0.788 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 11 | 160.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 15 | 161.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 16 | 161.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 44 | 161.87 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 73 | 162.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 403 | 166.12 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 439 | 166.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 493 | 167.02 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 644 | 168.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 653 | 168.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 663 | 168.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 792 | 169.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 836 | 169.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 893 | 170.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 895 | 170.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 905 | 170.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 926 | 170.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |