BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0338200 Os01g0338200|AK068083
(517 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0338200 Mov34/MPN/PAD-1 family protein 1054 0.0
Os01g0499300 Mov34/MPN/PAD-1 family protein 704 0.0
Os01g0661500 Mov34/MPN/PAD-1 family protein 227 1e-59
Os09g0378100 184 2e-46
>Os01g0338200 Mov34/MPN/PAD-1 family protein
Length = 517
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/517 (98%), Positives = 507/517 (98%)
Query: 1 MGPPQQARGGGIDIEACARPIAVDHRIKLPYYFRIAGNLLRQAKIYRDENNLVDLYVILL 60
MGPPQQARGGGIDIEACARPIAVDHRIKLPYYFRIAGNLLRQAKIYRDENNLVDLYVILL
Sbjct: 1 MGPPQQARGGGIDIEACARPIAVDHRIKLPYYFRIAGNLLRQAKIYRDENNLVDLYVILL 60
Query: 61 RYSSLVCETIPKHRDYHTFKLREVDFFRLAPHNQSKLIEVLSELESLKPVVQRQITEHNR 120
RYSSLVCETIPKHRDYHTFKLREVDFFRLAPHNQSKLIEVLSELESLKPVVQRQITEHNR
Sbjct: 61 RYSSLVCETIPKHRDYHTFKLREVDFFRLAPHNQSKLIEVLSELESLKPVVQRQITEHNR 120
Query: 121 ARGGAIESNSINGTIAVNNITKQHMTNPYTYQPFVGSNNGSFERPVPGGNHQMAPLMSAQ 180
ARGGAIESNSINGTIAVNNITKQHMTNPYTYQPFVGSNNGSFERPVPGGNHQMAPLMSAQ
Sbjct: 121 ARGGAIESNSINGTIAVNNITKQHMTNPYTYQPFVGSNNGSFERPVPGGNHQMAPLMSAQ 180
Query: 181 PDRLTRKQLANLPFPKEETLARHSILGPNGLHGQWTGPVTAIKVQYPSNLDIIKSDVSSL 240
PDRLTRKQLANLPFPKEETLARHSILGPNGLHGQWTGPVTAIKVQYPSNLDIIKSDVSSL
Sbjct: 181 PDRLTRKQLANLPFPKEETLARHSILGPNGLHGQWTGPVTAIKVQYPSNLDIIKSDVSSL 240
Query: 241 FPSVLNQDGQNGPSTISTDSTQIENDDMKSVLSLDDGRWSKLAEECASVPSVXXXXXXXX 300
FPSVLNQDGQNGPSTISTDSTQIENDDMKSVLSLDDGRWSKLAEECASVPSV
Sbjct: 241 FPSVLNQDGQNGPSTISTDSTQIENDDMKSVLSLDDGRWSKLAEECASVPSVSLEEELSQ 300
Query: 301 XXIKQPSPPPVLAELERRPIAPSEVADPTPGLAVSETGRYQNLHVPVKLMECFLRVAEAN 360
IKQPSPPPVLAELERRPIAPSEVADPTPGLAVSETGRYQNLHVPVKLMECFLRVAEAN
Sbjct: 301 LSIKQPSPPPVLAELERRPIAPSEVADPTPGLAVSETGRYQNLHVPVKLMECFLRVAEAN 360
Query: 361 TKRSLETCGVLAGTLKKRTFYVTALIIPKQKSTSDSCEATNEDELFDVQDKGSLFTLGWI 420
TKRSLETCGVLAGTLKKRTFYVTALIIPKQKSTSDSCEATNEDELFDVQDKGSLFTLGWI
Sbjct: 361 TKRSLETCGVLAGTLKKRTFYVTALIIPKQKSTSDSCEATNEDELFDVQDKGSLFTLGWI 420
Query: 421 HTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRRKHGIFHLSDPGGMGVIHDCP 480
HTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRRKHGIFHLSDPGGMGVIHDCP
Sbjct: 421 HTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRRKHGIFHLSDPGGMGVIHDCP 480
Query: 481 ERGFHPHKAPLDGSPIYEHCSHVYMNPDVKFDVIDLR 517
ERGFHPHKAPLDGSPIYEHCSHVYMNPDVKFDVIDLR
Sbjct: 481 ERGFHPHKAPLDGSPIYEHCSHVYMNPDVKFDVIDLR 517
>Os01g0499300 Mov34/MPN/PAD-1 family protein
Length = 518
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/518 (67%), Positives = 404/518 (77%), Gaps = 8/518 (1%)
Query: 3 PPQQARGGGIDIEACARPIAVDHRIKLPYYFRIAGNLLRQAKIYRDENNLVDLYVILLRY 62
P + G I+IEA ARP++VDHRI + YYFRIA NLLRQA IYR+E NLVDLY+ILLRY
Sbjct: 4 PSSRQAMGEINIEAMARPVSVDHRISIAYYFRIADNLLRQANIYREEKNLVDLYIILLRY 63
Query: 63 SSLVCETIPKHRDYHTFKLREVDFFRLAPHNQSKLIEVLSELESLKPVVQRQITEHNRAR 122
SSL+CETIPKHRDYH FKLRE +F + PHN KL+ V++ELE+LKPVV RQI + NR
Sbjct: 64 SSLLCETIPKHRDYHAFKLREKEFLKKGPHNSDKLLNVVNELETLKPVVLRQIADLNR-- 121
Query: 123 GGAIESNSINGTIAVNNITKQHMTNPYTY-QPFVGSNNGSFERPVPGGNHQMAPLMSAQP 181
G E NS +GT A + H+T + QP VGS G + P GG HQ+ P S +P
Sbjct: 122 GVTQEPNSQSGTSAAIS-QMDHLTQSSCFTQPLVGSPTGLLKMPFSGGKHQVEPTQSGRP 180
Query: 182 DRLTRKQLANLPFPKEETLARHSILGPNGLHGQWTGPVTAIKVQYPSNLDIIKSDVSSLF 241
D K NLP+PKEETL+RHS+LGPNGLHG+WT PVT I++QYPSN ++ KSDVSSL
Sbjct: 181 DSQLVKSYGNLPYPKEETLSRHSVLGPNGLHGKWTAPVTGIRIQYPSNAELTKSDVSSLV 240
Query: 242 PSVLNQDGQNGPSTISTDSTQIENDDMKSVLSLDDGRWSKLAEECASVPSVXXXXXXXXX 301
PS+LNQD GPS S D +N+DM+SVLSLDDG+ S EE SV S
Sbjct: 241 PSILNQDLLYGPSR-SQDFPTNKNEDMQSVLSLDDGQLSLPVEEATSV-SPGFEEEFSQL 298
Query: 302 XIKQPSPPPVLAEL--ERRPIAPSEVADPTPGLAVSETGRYQNLHVPVKLMECFLRVAEA 359
I+QPSPPPV+A++ + R I+ S VAD PG+A S TGRYQNLHVPV LMECFLRVAEA
Sbjct: 299 NIRQPSPPPVMAQVHPQHRAISTSTVADLGPGIASSSTGRYQNLHVPVTLMECFLRVAEA 358
Query: 360 NTKRSLETCGVLAGTLKKRTFYVTALIIPKQKSTSDSCEATNEDELFDVQDKGSLFTLGW 419
NT +LETCG+LAGTLKKRTFYVT LIIPKQ+STSDSC+ATNE+E+F+VQDKGSLFTLGW
Sbjct: 359 NTANNLETCGILAGTLKKRTFYVTTLIIPKQRSTSDSCQATNEEEIFEVQDKGSLFTLGW 418
Query: 420 IHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRRKHGIFHLSDPGGMGVIHDC 479
IHTHPTQ+CFLSSIDLHNHYSYQVMLPEAIAIVMAPTDT RKHGIFHL+DPGGMGVIHDC
Sbjct: 419 IHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTTRKHGIFHLTDPGGMGVIHDC 478
Query: 480 PERGFHPHKAPLDGSPIYEHCSHVYMNPDVKFDVIDLR 517
E GFHPH+ PLDG+ IYEHCSHVYMNP+VKFD++DLR
Sbjct: 479 QESGFHPHEEPLDGTSIYEHCSHVYMNPNVKFDMVDLR 516
>Os01g0661500 Mov34/MPN/PAD-1 family protein
Length = 287
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 142/197 (72%), Gaps = 3/197 (1%)
Query: 324 EVADPTPGLAVSETGRYQNLH---VPVKLMECFLRVAEANTKRSLETCGVLAGTLKKRTF 380
E AD +V ++ NLH + V+L + F+ +A+ NT ++ETCG+L + + T+
Sbjct: 88 EYADEQSRSSVGQSSASVNLHDMQISVRLTDEFIELAKENTGNNVETCGILGASFRDGTY 147
Query: 381 YVTALIIPKQKSTSDSCEATNEDELFDVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHYS 440
YVT LIIPKQ++T+ SC+A +E+E+ + + SL+ GWIHTHP+Q+CFLSSIDLH YS
Sbjct: 148 YVTMLIIPKQEATAHSCQAVSEEEIHAILSEQSLYPAGWIHTHPSQTCFLSSIDLHTQYS 207
Query: 441 YQVMLPEAIAIVMAPTDTRRKHGIFHLSDPGGMGVIHDCPERGFHPHKAPLDGSPIYEHC 500
YQVMLPEA+AIV+APTD R GIF L+DPGGMGV+ +C E GFH H+ DG PIYE C
Sbjct: 208 YQVMLPEAVAIVIAPTDPTRNCGIFRLTDPGGMGVLRECSESGFHAHRETTDGGPIYETC 267
Query: 501 SHVYMNPDVKFDVIDLR 517
S V NP+++F+++DLR
Sbjct: 268 SKVIFNPNLRFEIVDLR 284
>Os09g0378100
Length = 450
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/195 (51%), Positives = 130/195 (66%), Gaps = 13/195 (6%)
Query: 329 TPGLAVSETGRYQNLHVPVKLMECFLRVAEANTKRSLETCGVLAGTLKK----RTFYVTA 384
T G +S+ Y+ ++VP +L+ FL A NT +SLETCG++AGTL+ + F T
Sbjct: 261 TQGHGISDCSPYRMVYVPEELISRFLNEAVENTTKSLETCGIIAGTLRVDMDVKYFIATD 320
Query: 385 LIIPKQKSTSDSCEATNEDELFDVQDK-GSLFTLGWIHTHPTQSCFLSSIDLHNHYSYQV 443
LIIPKQ+STS S EATNE+E+ D+ ++ GS LGWIHTHPTQ CF+SS+DLHNHYS Q
Sbjct: 321 LIIPKQESTSYSREATNEEEILDIFEQLGSPSHLGWIHTHPTQECFMSSVDLHNHYSNQK 380
Query: 444 MLPEAIAIVMAPTDTRRKHGIFHLSDPGGMGVIHDCPERGFHPHKAPLDGSPIYEHCSHV 503
L EA AIV+AP ++R+ IFHL+ P GM I DC +RGFHPH YE CSHV
Sbjct: 381 DLREAFAIVVAP--SKREQNIFHLTVPDGMDEIGDCDDRGFHPH-----DRTTYEECSHV 433
Query: 504 YMNPDVKF-DVIDLR 517
+ + +V+DLR
Sbjct: 434 KWDSTISLHNVVDLR 448
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 89/177 (50%), Gaps = 21/177 (11%)
Query: 14 IEACA-RPIA-VDHRIKLPYYFRIAGNLLRQAKIYRDENNLVDLYVILLRYSSLVCETIP 71
IEA A RP+A V I L Y+R A + L QA++YR++ N V+LY +LLR+ L+ TI
Sbjct: 26 IEAPAPRPVAGVKKHIGLHVYYRFACSHLTQARVYREKENHVNLYAVLLRFLRLLLHTIL 85
Query: 72 KHRDYHTFKLREVDFFRLAPHNQSKLIEVLSELESLKPVV-----------QRQITEHNR 120
KH DY T V FF + L+EV+ ELE LKP+V Q + TE N
Sbjct: 86 KHPDYRTDN-SSVKFFI-----EKTLLEVIGELEYLKPIVQQKRQQQQRNQQEKTTEDN- 138
Query: 121 ARGGAIESNSINGTIAVNNITKQHMTNPYTYQPFVGSNNGSFERPVPGGNHQMAPLM 177
G A E ++ G A T QH T+ QP S S + V H AP++
Sbjct: 139 -IGSATEPLNLTGNNAEIVRTFQHTTSSNKPQPLDASGTTSSLQKVEPIIHSDAPIL 194
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,143,014
Number of extensions: 843262
Number of successful extensions: 2139
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2130
Number of HSP's successfully gapped: 5
Length of query: 517
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 412
Effective length of database: 11,553,331
Effective search space: 4759972372
Effective search space used: 4759972372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)