BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0326100 Os01g0326100|AK067102
         (93 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0326100  Similar to Peroxidase component PR-2 and/or 4 ...   157   1e-39
Os01g0327400  Similar to Peroxidase (Fragment)                     88   1e-18
Os01g0327100  Haem peroxidase family protein                       62   7e-11

>Os01g0326100 Similar to Peroxidase component PR-2 and/or 4 (Fragment)
          Length = 93

 Score =  157 bits (398), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/93 (87%), Positives = 81/93 (87%)

Query: 1  MAMKCLLVFFLVAFFPGAAVSAGLKVGFYNETCPSXXXXXXXXXXXXFKNNSGVAAGLIR 60
          MAMKCLLVFFLVAFFPGAAVSAGLKVGFYNETCPS            FKNNSGVAAGLIR
Sbjct: 1  MAMKCLLVFFLVAFFPGAAVSAGLKVGFYNETCPSAEALVQQAVAAAFKNNSGVAAGLIR 60

Query: 61 LHFHDCFVRVRLHLSRSILVSFITALFGVRTAS 93
          LHFHDCFVRVRLHLSRSILVSFITALFGVRTAS
Sbjct: 61 LHFHDCFVRVRLHLSRSILVSFITALFGVRTAS 93



>Os01g0327400 Similar to Peroxidase (Fragment)
          Length = 351

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 1  MAMKCLLVFFLVAFF--PGAAVSAGLKVGFYNETCPSXXXXXXXXXXXXFKNNSGVAAGL 58
          MAMKCL +FF       PGAAV AGLKVGFYN+TCPS            FKNNSGVA GL
Sbjct: 1  MAMKCLFLFFAFLVAFFPGAAVGAGLKVGFYNKTCPSAERLVQQAVAAAFKNNSGVAPGL 60

Query: 59 IRLHFHDCFVR 69
          IRLHFHDCFVR
Sbjct: 61 IRLHFHDCFVR 71



>Os01g0327100 Haem peroxidase family protein
          Length = 353

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 32/48 (66%)

Query: 22 AGLKVGFYNETCPSXXXXXXXXXXXXFKNNSGVAAGLIRLHFHDCFVR 69
          A L+VGFYN +CP+              NNSG+AAGLIRLHFHDCFVR
Sbjct: 28 AQLQVGFYNTSCPTAEALVRQAVVAAVANNSGLAAGLIRLHFHDCFVR 75



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.335    0.144    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,247,667
Number of extensions: 55658
Number of successful extensions: 342
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 3
Length of query: 93
Length of database: 17,035,801
Length adjustment: 62
Effective length of query: 31
Effective length of database: 13,798,533
Effective search space: 427754523
Effective search space used: 427754523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 149 (62.0 bits)