FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0327100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.42 (0.0819) R2 : 0.744
β1 : -2.05 (0.382) R2dD : 0.0429 R2D : 0.15
β2 : 1.17 (0.168) R2dC : 0.0277 R2C : 0.00808
β3 : 9.86 (0.343) R2dE : 0.964 R2E : 0.591
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.28 (1.25) R2dD*E : 0.0883 R2D*E : -0.365
γ1 : 1.09 (0.175) R2dN8 : 0.0459 R2N8 : -0.067
σ : 1.23
deviance : 692.23
__
_____
C
peak time of C : 4.35
E
wheather : temperature
threshold : 24.15
memory length : 5733
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.14
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
678.87 1.22 6.42 -2.07 1.16 9.75 2.23 8.13 1.08 4.25 24.33 5742 2.89 --
721.01 1.25 6.19 -0.661 1.33 9.16 2.04 -- 1.27 3.6 27.49 5561 2.71 --
692.23 1.23 6.42 -2.05 1.17 9.86 -- 8.28 1.09 4.35 24.15 5733 3.14 --
729.68 1.26 6.18 -0.698 1.36 9.12 -- -- 1.26 3.52 27.3 5539 2.99 --
751.83 1.28 6.45 -1.99 -- 9.75 -- 8.33 1.09 -- 24.04 6166 3.5 --
1986.13 2.09 6.67 -4.97 0.874 -- 2.28 -- -0.956 4.7 -- -- -- --
1999.7 2.09 6.68 -4.98 0.891 -- -- -- -0.967 4.83 -- -- -- --
743.02 1.27 6.22 -0.887 -- 8.99 -- -- 1.13 -- 63.6 5876 2.65 --
739.63 1.27 6.14 -- 1.31 9.33 -- -- 1.42 3.89 26.43 5594 2.98 --
2041.66 2.11 6.69 -4.95 -- -- -- -- -0.944 -- -- -- -- --
2653.72 2.41 6.56 -- 0.802 -- -- -- -0.412 5.02 -- -- -- --
755.89 1.28 6.16 -- -- 9.49 -- -- 1.33 -- 72.69 5849 2.37 --
2687.53 2.42 6.57 -- -- -- -- -- -0.395 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 614.42 temperature 20 14400 < th dose dependent rect. 3 1
9 620.44 temperature 20 14400 < th dose dependent rect. 23 7
70 656.34 temperature 20 14400 < th dose dependent sin 9 NA
92 665.67 radiation 1 43200 < th dose dependent rect. 18 11
105 670.11 radiation 1 43200 < th dose dependent rect. 18 1
107 670.24 radiation 1 43200 < th dose dependent rect. 18 4
158 681.07 radiation 1 43200 < th dose independent rect. 18 1
159 681.07 radiation 1 43200 < th dose independent rect. 18 4
168 681.53 radiation 1 43200 < th dose independent rect. 18 10
233 697.36 radiation 1 43200 < th dose dependent rect. 17 18
252 700.64 radiation 1 43200 < th dose dependent rect. 3 2
257 701.37 humidity 90 43200 > th dose dependent rect. 5 1
258 701.41 radiation 1 43200 < th dose dependent rect. 1 4
263 702.14 radiation 1 43200 > th dose independent rect. 18 1
297 705.98 radiation 1 43200 < th dose dependent sin 12 NA
361 714.69 humidity 90 43200 < th dose independent rect. 18 1
421 722.58 temperature 20 14400 < th dose dependent no NA NA
444 724.56 radiation 1 43200 < th dose dependent rect. 4 5
465 726.06 radiation 1 43200 < th dose dependent rect. 21 12
468 726.14 humidity 90 43200 > th dose independent rect. 22 2
494 727.18 temperature 15 4320 > th dose dependent rect. 2 1
524 729.34 radiation 1 43200 < th dose dependent rect. 7 22
540 732.20 temperature 15 4320 > th dose dependent rect. 2 5
541 732.33 radiation 1 43200 < th dose dependent rect. 4 15
581 732.87 radiation 1 43200 < th dose dependent rect. 21 22
591 732.93 radiation 1 43200 < th dose dependent no NA NA
601 733.56 radiation 1 43200 < th dose dependent rect. 10 23
617 734.41 temperature 15 14400 > th dose dependent rect. 5 1
681 737.06 humidity 90 43200 > th dose independent rect. 18 6
716 738.54 radiation 1 43200 < th dose dependent rect. 7 12
719 738.62 radiation 1 43200 < th dose dependent rect. 7 15
777 740.42 temperature 20 14400 < th dose dependent rect. 5 23
918 743.77 temperature 20 14400 < th dose independent rect. 5 2
926 744.06 temperature 15 4320 > th dose dependent sin 9 NA
990 745.73 humidity 90 43200 < th dose independent rect. 17 8