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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0326100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase component PR-2 and/or 4 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0264) R2 : 0.384
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.01 (0.238) R2dE : 0.383 R2E : 0.384
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0305 (0.0557) R2dN8 : 0.000577 R2N8 : 0.00156
σ : 0.496
deviance : 113.35
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 93.98
memory length : 553
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.6
open length of G : 2.18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.09 0.47 3.31 -0.199 0.361 2.35 -1.28 -4.28 -0.0375 4.29 93 644 20.1 1.65
111.93 0.493 3.32 -0.269 0.334 2.31 -1.76 -- -0.0464 3.91 93 632 20.1 2.33
102.14 0.471 3.32 -0.198 0.375 2.57 -- -5.32 -0.0412 5.42 93.15 576 19.9 2.64
112.47 0.494 3.32 -0.133 0.462 2.69 -- -- -0.126 4.52 93.98 548 20.5 2.35
109.23 0.487 3.31 -0.189 -- 2.65 -- -5.2 -0.0228 -- 93.18 581 19.9 2.63
160.1 0.593 3.33 -0.26 0.505 -- -1.72 -- -0.136 3.85 -- -- -- --
168.6 0.608 3.32 -0.236 0.504 -- -- -- -0.126 4.29 -- -- -- --
113.25 0.496 3.31 -0.111 -- 3.96 -- -- -0.0333 -- 93.97 537 20.6 2.23
107.57 0.483 3.32 -- 0.435 3.72 -- -- -0.0987 4.99 93.98 550 20.6 2.25
182.29 0.631 3.33 -0.216 -- -- -- -- -0.113 -- -- -- -- --
170.07 0.61 3.32 -- 0.499 -- -- -- -0.1 4.3 -- -- -- --
113.35 0.496 3.32 -- -- 4.01 -- -- -0.0305 -- 93.98 553 20.6 2.18
183.51 0.632 3.32 -- -- -- -- -- -0.089 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.11 atmosphere 1005.0 720 < th dose independent rect. 19 3
2 126.53 atmosphere 1005.0 720 < th dose independent rect. 21 1
4 126.93 humidity 90.0 720 > th dose dependent rect. 20 1
6 127.53 radiation 1.0 1440 < th dose independent rect. 11 4
7 127.53 radiation 1.0 1440 < th dose dependent rect. 11 4
14 127.95 atmosphere 1005.0 720 > th dose independent rect. 18 7
16 128.06 atmosphere 1005.0 720 > th dose independent rect. 19 5
17 128.07 radiation 1.0 1440 > th dose independent rect. 11 4
27 128.30 precipitation 0.1 270 > th dose independent rect. 2 2
30 128.38 atmosphere 1005.0 720 > th dose independent rect. 21 2
31 128.47 precipitation 0.1 270 > th dose dependent rect. 2 2
43 128.59 radiation 1.0 1440 < th dose dependent rect. 9 8
56 129.04 radiation 1.0 1440 > th dose independent rect. 9 6
83 130.25 wind 1.0 270 < th dose dependent rect. 23 3
92 130.85 wind 1.0 270 < th dose independent rect. 23 3
97 131.37 wind 1.0 720 < th dose independent rect. 23 1
100 131.56 humidity 90.0 720 > th dose dependent rect. 20 3
104 131.76 wind 7.0 4320 > th dose independent rect. 17 2
110 132.29 wind 7.0 4320 < th dose independent rect. 17 2
121 132.49 wind 1.0 720 < th dose dependent rect. 23 1
149 133.96 wind 1.0 270 < th dose independent rect. 17 9
157 134.17 wind 1.0 1440 > th dose independent rect. 23 1
171 134.57 wind 5.0 4320 > th dose dependent rect. 18 1
172 134.63 wind 1.0 270 < th dose independent rect. 1 1
180 134.78 wind 1.0 270 < th dose dependent rect. 17 9
209 135.46 wind 1.0 270 > th dose independent sin 17 NA
226 135.90 radiation 1.0 1440 > th dose independent rect. 9 1
252 136.40 temperature 20.0 90 > th dose independent rect. 1 5
255 136.42 radiation 20.0 1440 < th dose dependent rect. 11 2
260 136.54 wind 1.0 30 < th dose independent rect. 17 11
277 136.75 radiation 20.0 1440 < th dose dependent rect. 11 5
280 136.81 temperature 20.0 10 > th dose independent rect. 1 5
306 137.24 wind 1.0 30 < th dose independent rect. 13 15
321 137.43 wind 1.0 30 < th dose independent rect. 10 18
327 137.50 temperature 20.0 90 > th dose independent rect. 23 7
347 137.63 radiation 20.0 1440 < th dose dependent rect. 11 11
351 137.64 radiation 20.0 1440 < th dose dependent rect. 11 17
358 137.74 wind 7.0 4320 < th dose independent rect. 15 10
374 137.91 wind 7.0 4320 > th dose independent rect. 15 16
396 138.13 temperature 20.0 10 > th dose independent rect. 1 3
408 138.25 radiation 10.0 1440 < th dose dependent sin 20 NA
411 138.28 wind 1.0 720 > th dose independent rect. 17 8
416 138.34 wind 7.0 4320 < th dose independent rect. 15 15
481 138.57 humidity 60.0 14400 > th dose independent rect. 23 9
485 138.59 wind 1.0 270 < th dose independent sin 17 NA
489 138.63 radiation 20.0 1440 < th dose independent rect. 11 2
611 139.07 radiation 20.0 1440 < th dose independent rect. 11 5
628 139.19 precipitation 0.1 30 > th dose independent rect. 3 5
651 139.22 atmosphere 1005.0 720 < th dose independent sin 15 NA
690 139.34 precipitation 0.1 30 > th dose dependent rect. 3 5
744 139.47 atmosphere 1005.0 720 > th dose independent sin 15 NA
762 139.56 atmosphere 1005.0 10 < th dose dependent rect. 24 7
763 139.58 atmosphere 1005.0 270 < th dose dependent rect. 1 1
773 139.63 precipitation 0.1 30 > th dose independent rect. 3 3
780 139.63 precipitation 0.1 30 > th dose dependent rect. 3 3
794 139.68 humidity 60.0 14400 < th dose independent rect. 6 1
796 139.68 humidity 60.0 14400 < th dose independent rect. 20 1
798 139.68 radiation 20.0 14400 > th dose independent rect. 17 1
849 139.68 humidity 60.0 14400 < th dose dependent rect. 6 1
851 139.68 humidity 60.0 14400 < th dose dependent rect. 20 1
853 139.68 radiation 20.0 14400 > th dose dependent rect. 17 1
954 139.85 atmosphere 1010.0 270 < th dose dependent rect. 22 7
981 139.96 radiation 1.0 1440 > th dose dependent rect. 11 4
996 140.00 radiation 20.0 1440 < th dose independent rect. 11 12
997 140.00 radiation 20.0 1440 < th dose independent rect. 11 18