BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0271500 Os01g0271500|AK101384
(451 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0271500 Similar to RUB-activating enzyme (Ubiquitin ac... 860 0.0
Os07g0586500 Similar to SUMO activating enzyme 2 138 9e-33
AK110124 87 2e-17
Os11g0106400 Similar to Ubiquitin-activating enzyme E1 2 77 4e-14
Os12g0105950 Similar to Ubiquitin-activating enzyme E1 2 76 4e-14
>Os01g0271500 Similar to RUB-activating enzyme (Ubiquitin activating enzyme
E1-like protein)
Length = 451
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/451 (93%), Positives = 420/451 (93%)
Query: 1 MSSXXXXXXXXXXRWRDLDMLLSRPGNLVHADFNPSPGLRDXXXXXXXXXXXXXXXXXXX 60
MSS RWRDLDMLLSRPGNLVHADFNPSPGLRD
Sbjct: 1 MSSPDEDPPTEPERWRDLDMLLSRPGNLVHADFNPSPGLRDSLGSLVEVLVVGAGGLGCE 60
Query: 61 XXKDLALSGFKNIHVIDMDTIDVSNLNRQFLFRVQDVGKSKAEVAAKRVMERVSGVNIVP 120
KDLALSGFKNIHVIDMDTIDVSNLNRQFLFRVQDVGKSKAEVAAKRVMERVSGVNIVP
Sbjct: 61 LLKDLALSGFKNIHVIDMDTIDVSNLNRQFLFRVQDVGKSKAEVAAKRVMERVSGVNIVP 120
Query: 121 HFCRIEDKEIEFYSQFSIIVLGLDSIEARSYINSVACGFLEYDSDDKPIPETLKPMVDGG 180
HFCRIEDKEIEFYSQFSIIVLGLDSIEARSYINSVACGFLEYDSDDKPIPETLKPMVDGG
Sbjct: 121 HFCRIEDKEIEFYSQFSIIVLGLDSIEARSYINSVACGFLEYDSDDKPIPETLKPMVDGG 180
Query: 181 TEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVH 240
TEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVH
Sbjct: 181 TEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVH 240
Query: 241 PGKPFDADDAEHMQWIYSEALKRAELFGISGVTYSFTQGVVKNIIPAIASTNAIVSAACA 300
PGKPFDADDAEHMQWIYSEALKRAELFGISGVTYSFTQGVVKNIIPAIASTNAIVSAACA
Sbjct: 241 PGKPFDADDAEHMQWIYSEALKRAELFGISGVTYSFTQGVVKNIIPAIASTNAIVSAACA 300
Query: 301 LEALKLISGCSKTVSNYLTYNGLDGTHINVSEFAREKDCLVCGPGTLIELGTSTTLSEFI 360
LEALKLISGCSKTVSNYLTYNGLDGTHINVSEFAREKDCLVCGPGTLIELGTSTTLSEFI
Sbjct: 301 LEALKLISGCSKTVSNYLTYNGLDGTHINVSEFAREKDCLVCGPGTLIELGTSTTLSEFI 360
Query: 361 KMLEEHPKLLMSRASVTHEGDNLYMQAPEVLEQMTRPNLGVPMFELLKGAARTTVHVTGM 420
KMLEEHPKLLMSRASVTHEGDNLYMQAPEVLEQMTRPNLGVPMFELLKGAARTTVHVTGM
Sbjct: 361 KMLEEHPKLLMSRASVTHEGDNLYMQAPEVLEQMTRPNLGVPMFELLKGAARTTVHVTGM 420
Query: 421 AENNGKKVSSLRKLRVTFKGVEESSKMDESS 451
AENNGKKVSSLRKLRVTFKGVEESSKMDESS
Sbjct: 421 AENNGKKVSSLRKLRVTFKGVEESSKMDESS 451
>Os07g0586500 Similar to SUMO activating enzyme 2
Length = 406
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 111/188 (59%), Gaps = 17/188 (9%)
Query: 63 KDLALSGFKNIHVIDMDTIDVSNLNRQFLFRVQDVGKSKAEVAAKRVMERVSGVNIVPHF 122
K LALSGF++IH+ID+DTI+VSNLNRQFLFR VG+SKA VA V++ +NI +
Sbjct: 34 KTLALSGFRDIHIIDLDTIEVSNLNRQFLFRQSHVGQSKAHVARDAVLKFRPNINITSYH 93
Query: 123 CRIEDKE--IEFYSQFSIIVLGLDSIEARSYINSVACGFLEYDSDDKPIPETLKPMVDGG 180
++D + +EF+ QF++++ GLD+++AR ++N + C E P+V+ G
Sbjct: 94 ANVKDAQFNVEFFKQFNVVLNGLDNLDARRHVNRL-CLAAEV------------PLVESG 140
Query: 181 TEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVH 240
T GF G V + G T C+EC P +P+CT+ TP HCI +A + + ++
Sbjct: 141 TTGFLGQVTVHVKGKTECYECQPKPVPKS--YPVCTITSTPSKFVHCIVWAKELLFAKMF 198
Query: 241 PGKPFDAD 248
K D D
Sbjct: 199 GDKNQDND 206
>AK110124
Length = 657
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 22/166 (13%)
Query: 73 IHVIDMDTIDVSNLNRQFLFRVQDVGKSKAEVAAKRVMERVSGV--NIVPHFCRI--EDK 128
IHV DMDTI+ SNLNRQFLFR +DVG KA+ AA V E + I H R+ E +
Sbjct: 104 IHVTDMDTIEKSNLNRQFLFRSKDVGHFKADTAAAAVAEMNPDLKGKIHSHQNRVGPETE 163
Query: 129 EI---EFYSQFSIIVLGLDSIEARSYINSVACGFLEYDSDDKPIPETLKPMVDGGTEGFK 185
++ EF++ + + LD+++AR Y++ C + E KP+++ GT G K
Sbjct: 164 DVYGDEFFASLTGVTNALDNVQARQYMDR-RCVYYE------------KPLLESGTLGTK 210
Query: 186 GHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYA 231
+ +V++P T + + PP+ P+CTL P H I++A
Sbjct: 211 ANTQVVVPHLTESYSSS--QDPPEKSIPVCTLKNFPNAIEHTIQWA 254
>Os11g0106400 Similar to Ubiquitin-activating enzyme E1 2
Length = 1048
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 33/184 (17%)
Query: 63 KDLALSGFK-----NIHVIDMDTIDVSNLNRQFLFRVQDVGKSKAEVAAKRVMERVSGVN 117
K+LAL G + V D D I+ SNL+RQFLFR ++G+ K+ VAA M +N
Sbjct: 477 KNLALMGISCNQNGKLIVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAM----AIN 532
Query: 118 IVPHFCRIEDK---EIE------FYSQFSIIVLGLDSIEARSYINSVACGFLEYDSDDKP 168
H ++++ E E F+ +V LD++ AR YI+S C + +
Sbjct: 533 PKLHVEALQNRASPETENVFNDAFWESLDAVVNALDNVTARMYIDS-RCVYFQ------- 584
Query: 169 IPETLKPMVDGGTEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCI 228
KP+++ GT G K + +++IP T + + PP+ + P+CT+ P HC+
Sbjct: 585 -----KPLLESGTLGAKCNTQMVIPHLTENYGAS--RDPPEKQAPMCTVHSFPHNIDHCL 637
Query: 229 EYAH 232
+A
Sbjct: 638 TWAR 641
>Os12g0105950 Similar to Ubiquitin-activating enzyme E1 2
Length = 310
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 33/184 (17%)
Query: 63 KDLALSGFK-----NIHVIDMDTIDVSNLNRQFLFRVQDVGKSKAEVAAKRVMERVSGVN 117
K+LAL G + V D D I+ SNL+RQFLFR ++G+ K+ VAA M +N
Sbjct: 81 KNLALMGISCNQNGKLTVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAM----AIN 136
Query: 118 IVPHFCRIEDK---EIE------FYSQFSIIVLGLDSIEARSYINSVACGFLEYDSDDKP 168
H ++++ E E F+ +V LD++ AR YI+S C + +
Sbjct: 137 PKLHVEALQNRASPETENVFNDAFWESLDAVVNALDNVTARMYIDS-RCVYFQ------- 188
Query: 169 IPETLKPMVDGGTEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCI 228
KP+++ GT G K + +++IP T + + PP+ + P+CT+ P HC+
Sbjct: 189 -----KPLLESGTLGAKCNTQMVIPHLTENYGAS--RDPPEKQAPMCTVHSFPHNIDHCL 241
Query: 229 EYAH 232
+A
Sbjct: 242 TWAR 245
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,256,837
Number of extensions: 574930
Number of successful extensions: 1169
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1155
Number of HSP's successfully gapped: 7
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)