Os07g0586500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SUMO activating enzyme 2.
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Os07g0586500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SUMO activating enzyme 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.68 | 0.219 | 12.1 | -0.115 | 0.667 | 0.389 | 0.379 | -5.63 | 0.0328 | 19 | 29.99 | 2668 | -- | -- |
| 26.45 | 0.24 | 12 | 0.737 | 0.689 | 0.214 | 0.39 | -- | 0.0927 | 18.8 | 15.4 | 24091 | -- | -- |
| 22.01 | 0.218 | 12.1 | -0.118 | 0.675 | 0.408 | -- | -5.81 | 0.0496 | 18.9 | 30.03 | 2645 | -- | -- |
| 26.79 | 0.241 | 12 | 0.74 | 0.696 | 0.215 | -- | -- | 0.0949 | 18.8 | 15.52 | 24245 | -- | -- |
| 45.39 | 0.314 | 12.1 | -0.216 | -- | 0.432 | -- | -5.97 | 0.0166 | -- | 30 | 2714 | -- | -- |
| 27.08 | 0.244 | 12 | 0.911 | 0.692 | -- | 0.376 | -- | 0.142 | 18.8 | -- | -- | -- | -- |
| 27.44 | 0.245 | 12 | 0.905 | 0.693 | -- | -- | -- | 0.143 | 18.8 | -- | -- | -- | -- |
| 51.03 | 0.333 | 12 | 0.936 | -- | -0.142 | -- | -- | 0.152 | -- | 26.81 | 5618 | -- | -- |
| 31.05 | 0.26 | 12.1 | -- | 0.692 | 0.715 | -- | -- | -0.0966 | 18.7 | 16.73 | 47520 | -- | -- |
| 52.56 | 0.339 | 12 | 0.89 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 49.04 | 0.328 | 12 | -- | 0.682 | -- | -- | -- | 0.0421 | 18.9 | -- | -- | -- | -- |
| 56.09 | 0.349 | 12 | -- | -- | 0.701 | -- | -- | -0.106 | -- | 16.74 | 47520 | -- | -- |
| 73.44 | 0.4 | 12 | -- | -- | -- | -- | -- | 0.0307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.62 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 2 | 21.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 12 | 22.01 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 17 | 22.05 | temperature | 30 | 1440 | > th | dose independent | sin | 6 | NA |
| 18 | 22.05 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 29 | 22.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 47 | 22.11 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 57 | 22.13 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 81 | 22.14 | temperature | 30 | 1440 | > th | dose dependent | sin | 2 | NA |
| 101 | 22.15 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 102 | 22.15 | temperature | 30 | 1440 | > th | dose dependent | sin | 0 | NA |
| 117 | 22.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 126 | 22.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 129 | 22.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 150 | 22.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 155 | 22.19 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 308 | 22.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 309 | 22.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 314 | 22.23 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 324 | 22.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 325 | 22.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 326 | 22.24 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 375 | 22.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 377 | 22.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 380 | 22.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 388 | 22.26 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 389 | 22.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 392 | 22.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 502 | 22.27 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 510 | 22.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 512 | 22.27 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 533 | 22.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 595 | 22.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 644 | 22.32 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 666 | 22.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 12 |
| 682 | 22.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 18 |
| 714 | 22.34 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 768 | 22.35 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 788 | 22.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 843 | 22.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 849 | 22.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 851 | 22.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 898 | 22.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 13 |