Os01g0271500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RUB-activating enzyme (Ubiquitin activating enzyme E1-like protein).
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Os01g0271500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RUB-activating enzyme (Ubiquitin activating enzyme E1-like protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.08 | 0.361 | 9.65 | -0.508 | 0.856 | 0.981 | 0.191 | -1.1 | -0.451 | 14.5 | 25.03 | 4680 | -- | -- |
| 59.47 | 0.359 | 9.62 | -0.234 | 0.847 | 0.855 | 0.191 | -- | -0.392 | 14.5 | 25.34 | 4718 | -- | -- |
| 59.19 | 0.358 | 9.65 | -0.489 | 0.854 | 0.981 | -- | -1.09 | -0.44 | 14.5 | 25.3 | 4687 | -- | -- |
| 59.57 | 0.359 | 9.62 | -0.216 | 0.861 | 0.872 | -- | -- | -0.378 | 14.5 | 25.3 | 4690 | -- | -- |
| 70.67 | 0.394 | 9.66 | -0.373 | -- | 1.66 | -- | -2.04 | -0.508 | -- | 25.3 | 4687 | -- | -- |
| 84.29 | 0.43 | 9.61 | 0.0776 | 0.847 | -- | 0.147 | -- | -0.344 | 14.7 | -- | -- | -- | -- |
| 84.37 | 0.43 | 9.61 | 0.0812 | 0.848 | -- | -- | -- | -0.344 | 14.7 | -- | -- | -- | -- |
| 72.41 | 0.398 | 9.63 | -0.154 | -- | 1.51 | -- | -- | -0.451 | -- | 25.3 | 4687 | -- | -- |
| 60.7 | 0.363 | 9.61 | -- | 0.866 | 0.812 | -- | -- | -0.363 | 14.5 | 25.41 | 4708 | -- | -- |
| 126.18 | 0.525 | 9.61 | 0.045 | -- | -- | -- | -- | -0.365 | -- | -- | -- | -- | -- |
| 84.54 | 0.43 | 9.61 | -- | 0.846 | -- | -- | -- | -0.353 | 14.7 | -- | -- | -- | -- |
| 73.02 | 0.399 | 9.63 | -- | -- | 1.49 | -- | -- | -0.433 | -- | 25.3 | 4687 | -- | -- |
| 126.24 | 0.524 | 9.61 | -- | -- | -- | -- | -- | -0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 6 | 58.10 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 16 | 58.27 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 17 | 58.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 21 | 58.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 31 | 58.50 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 33 | 58.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 42 | 58.61 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 49 | 58.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 50 | 58.66 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 75 | 58.78 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 90 | 58.85 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 92 | 58.85 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 15 |
| 112 | 58.92 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 121 | 58.93 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 170 | 59.03 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 183 | 59.08 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 209 | 59.17 | temperature | 25 | 4320 | > th | dose dependent | sin | 4 | NA |
| 239 | 59.23 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 247 | 59.25 | humidity | 80 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 285 | 59.31 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 309 | 59.36 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 337 | 59.41 | humidity | 80 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 541 | 59.69 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 571 | 59.74 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 659 | 59.83 | humidity | 70 | 14400 | > th | dose dependent | sin | 18 | NA |
| 692 | 59.86 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 747 | 59.89 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 18 |
| 877 | 60.01 | temperature | 10 | 14400 | > th | dose dependent | sin | 20 | NA |
| 891 | 60.02 | humidity | 80 | 14400 | > th | dose independent | sin | 21 | NA |
| 943 | 60.05 | humidity | 80 | 14400 | < th | dose independent | sin | 21 | NA |