BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0250900 Os01g0250900|AK065179
(579 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0250900 HAD superfamily (subfamily IG) hydrolase, 5\'-... 1005 0.0
Os09g0424600 HAD superfamily (subfamily IG) hydrolase, 5\'-... 144 3e-34
Os12g0180600 HAD superfamily (subfamily IG) hydrolase, 5\'-... 125 6e-29
Os03g0774300 HAD superfamily (subfamily IG) hydrolase, 5\'-... 93 5e-19
>Os01g0250900 HAD superfamily (subfamily IG) hydrolase, 5\'-Nucleotidase protein
Length = 579
Score = 1005 bits (2599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/579 (86%), Positives = 501/579 (86%)
Query: 1 MADSIELARRLCLQXXXXXXXXXXXXXXXXLGAXXXXXXXXXXXXXXXXXXXXXXXALDS 60
MADSIELARRLCLQ LGA ALDS
Sbjct: 1 MADSIELARRLCLQPPARRTGTGRCRPRGRLGAPSLRVPRPPLSLSLSLWSSLRCRALDS 60
Query: 61 TRPVAVXXXXXXXXXXXXXXXSYFALTSSRLSRVDYLGESTKGDLNVRREHLDAFGGNGK 120
TRPVAV SYFALTSSRLSRVDYLGESTKGDLNVRREHLDAFGGNGK
Sbjct: 61 TRPVAVEGGLGDEEDEDEEGESYFALTSSRLSRVDYLGESTKGDLNVRREHLDAFGGNGK 120
Query: 121 STLHGPIEEIAWQXXXXXXXXXXXXGIADPFSVRHSPRGIFCTRTLNLRSISVIGYDMDY 180
STLHGPIEEIAWQ GIADPFSVRHSPRGIFCTRTLNLRSISVIGYDMDY
Sbjct: 121 STLHGPIEEIAWQEAREAESLLRELGIADPFSVRHSPRGIFCTRTLNLRSISVIGYDMDY 180
Query: 181 TLIHYNVMAWEGRAYDYGMANLKGMGFPVDDLEFDPDLVIRGLIMDKDKGNLVKADRFGY 240
TLIHYNVMAWEGRAYDYGMANLKGMGFPVDDLEFDPDLVIRGLIMDKDKGNLVKADRFGY
Sbjct: 181 TLIHYNVMAWEGRAYDYGMANLKGMGFPVDDLEFDPDLVIRGLIMDKDKGNLVKADRFGY 240
Query: 241 IKRAMHGTQMLSTSAVSEIYGRELVDLRKESRWEFLNTLFSVSEAVMFMQMVDKLDQGLV 300
IKRAMHGTQMLSTSAVSEIYGRELVDLRKESRWEFLNTLFSVSEAVMFMQMVDKLDQGLV
Sbjct: 241 IKRAMHGTQMLSTSAVSEIYGRELVDLRKESRWEFLNTLFSVSEAVMFMQMVDKLDQGLV 300
Query: 301 PAELGPLDYKGLYNAVSRALFRAHVEGQLKSEIMAEPERFVXXXXXXXXXXXXQKEAGKR 360
PAELGPLDYKGLYNAVSRALFRAHVEGQLKSEIMAEPERFV QKEAGKR
Sbjct: 301 PAELGPLDYKGLYNAVSRALFRAHVEGQLKSEIMAEPERFVEPDPELPLALLDQKEAGKR 360
Query: 361 LLLITNSDYHYTNKMMNHAFNRFLPNDMAWRDLFEMVIVSARKPEFFQISHPLYEVVTND 420
LLLITNSDYHYTNKMMNHAFNRFLPNDMAWRDLFEMVIVSARKPEFFQISHPLYEVVTND
Sbjct: 361 LLLITNSDYHYTNKMMNHAFNRFLPNDMAWRDLFEMVIVSARKPEFFQISHPLYEVVTND 420
Query: 421 GLMRPCFKANSGGLYSGGSAQMVEKSLDIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 480
GLMRPCFKANSGGLYSGGSAQMVEKSLDIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC
Sbjct: 421 GLMRPCFKANSGGLYSGGSAQMVEKSLDIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 480
Query: 481 RELEDEFDALIRSHVQKEQLITLIQQKEVVGDLFNQLRLALQRRTNSRPAQTLAATCMDD 540
RELEDEFDALIRSHVQKEQLITLIQQKEVVGDLFNQLRLALQRRTNSRPAQTLAATCMDD
Sbjct: 481 RELEDEFDALIRSHVQKEQLITLIQQKEVVGDLFNQLRLALQRRTNSRPAQTLAATCMDD 540
Query: 541 QELTESMQKLLIVMQRLDEKIAPMLESDGELFNKRKIIF 579
QELTESMQKLLIVMQRLDEKIAPMLESDGELFNKRKIIF
Sbjct: 541 QELTESMQKLLIVMQRLDEKIAPMLESDGELFNKRKIIF 579
>Os09g0424600 HAD superfamily (subfamily IG) hydrolase, 5\'-Nucleotidase protein
Length = 536
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 165/340 (48%), Gaps = 14/340 (4%)
Query: 156 SPRGIFCTRTLNLRSISVIGYDMDYTLIHYNVMAWEGRAYDYGMANL-KGMGFPVDDL-- 212
+P+GI+ + + L + V G+D DYTL HY+ + YD +L + +P L
Sbjct: 77 NPQGIYVNKNVKLDDLQVYGFDYDYTLSHYS-EHLQCLIYDLAKKHLVNELKYPESCLKY 135
Query: 213 EFDPDLVIRGLIMDKDKGNLVKADRFGYIKR--AMHGTQMLSTSAVSEIYGRELVDLRKE 270
E+D IRGL D+ KG L+K D FG I+ G LS S + E+YG + +
Sbjct: 136 EYDHGFPIRGLYYDRLKGCLLKLDFFGSIEPDGCFFGRHKLSLSEIKELYGTRHIGRDQA 195
Query: 271 SRWEFLNTLFSVSEAVMFMQMVDKLDQGLVPAELGPLDYKGLYNAVSRALFRAHVEGQLK 330
+ L +F SEA + +V Q V A L D +Y V++++ H G +
Sbjct: 196 RQLVGLMDVFCFSEACLLADIV----QHFVDARL-EFDASYVYEDVNQSIQHVHRSGLIH 250
Query: 331 SEIMAEPERFVXXXXXXXXXXXXQKEAGKRLLLITNSDYHYTNKMMNHAFNRFLPNDMAW 390
+I++EP++++ +E GK L L+TNS +++ + M++ + +W
Sbjct: 251 RKILSEPQKYLIKNSQVFRFLKMLREKGKNLFLLTNSPFYFVDGGMSYLLEDEHFDGNSW 310
Query: 391 RDLFEMVIVSARKPEFFQISHP--LYEVVTNDGLMRPCFKANSGGLYSGGSAQMVEKSLD 448
R+LF++VI A KP F+ HP +Y+ + K +Y G + +
Sbjct: 311 RELFDVVIAQANKPTFYNSDHPFRVYDTQKDTLAFTAVDKFLPNEVYYHGCLKSFLQITK 370
Query: 449 IHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEDEFD 488
G E++Y GDH+ +D+ + WRTA + RELEDE +
Sbjct: 371 WRGPEVIYFGDHLLSDL-RGPAKAGWRTAAVIRELEDEIE 409
>Os12g0180600 HAD superfamily (subfamily IG) hydrolase, 5\'-Nucleotidase protein
Length = 905
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 7/245 (2%)
Query: 160 IFCTRTLNLRSISVIGYDMDYTLIHYNVMAWEGRAYDYGMANLKGMGFPVDDLE--FDPD 217
IFC+RT+N+ I IG+ M+YTLI+Y V +E AY L +P LE ++ +
Sbjct: 382 IFCSRTVNMEDIKAIGFKMEYTLINYKV-TFENLAYVEAKKRLVNGKYPEKILEWNYNSE 440
Query: 218 LVIRGLIMDKDKGNLVKADRFGYIKRAMHGTQMLSTSAVSEIYGRELVDLRKESRWEFLN 277
+IRGLI+DK KGN++K D + +K + HG + +YG + +E + ++
Sbjct: 441 HMIRGLIIDKKKGNIIKVDHYNNVKMSYHGMNEMPYEESKNVYGSTF--MFEEPEFAAMD 498
Query: 278 TLFSVSEAVMFMQMVDKLDQGLVPAELGPLDYKGLYNAVSRALFRAHVEGQLKSEIMAEP 337
T FS E +F Q+VD +D P E+ Y LY + A + + +G LK + +
Sbjct: 499 TTFSCCEGYLFAQLVDLMDTN--PQEVPAPTYMTLYKHLREAFDQGYKDGTLKQSVANDL 556
Query: 338 ERFVXXXXXXXXXXXXQKEAGKRLLLITNSDYHYTNKMMNHAFNRFLPNDMAWRDLFEMV 397
R++ K G LIT+S + YT+ +M++A ++ N +W F++V
Sbjct: 557 ARYIDKDPSLLPMLQNIKNKGISTFLITDSLWDYTDIVMDYALHQDKVNKHSWLQYFDIV 616
Query: 398 IVSAR 402
+R
Sbjct: 617 FTGSR 621
>Os03g0774300 HAD superfamily (subfamily IG) hydrolase, 5\'-Nucleotidase protein
Length = 348
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 33/252 (13%)
Query: 296 DQGLVPAELGPLDYKGLYNAVSRALFRAHVEGQLKSEIMAEPERFVXXXXXXXXXXXXQK 355
+ G VP+ DY +Y V A+ H +G LK + +P R++ +
Sbjct: 4 NPGKVPSGT---DYPLMYRDVRSAVDLCHRDGTLKRMVAKDPSRYINEDLAIVPMLEMIR 60
Query: 356 EAGKRLLLITNSDYHYTNKMMNHAFNRFLPN-----DMAWRDLFEMVIVSARKPEFFQIS 410
++G+ L+TNS + YT+ +MN+ + + + W F++VI + KP FF
Sbjct: 61 KSGRSTFLVTNSLWDYTDVVMNYLCRPYTSDVSSSHNHKWLGYFDVVITGSAKPGFFHDG 120
Query: 411 H--PLYEVVTNDGLM-----------------RPCFKANSGGLYSGGSAQMVEKSLDI-H 450
+ L+EV + G + RP K +Y GG+ + + L +
Sbjct: 121 NRAGLFEVEPDSGKLLNADLHIGSPRSGQQPSRPIHK-----IYQGGNVGHLHRLLSVAS 175
Query: 451 GDEILYVGDHIYTDVSQSKVHLRWRTALICRELEDEFDALIRSHVQKEQLITLIQQKEVV 510
+ILYVGDHIY D+ +SK L WRT L+ ELE E L S +++L L +++ +
Sbjct: 176 SSQILYVGDHIYGDILRSKKVLGWRTMLVIPELEQEVKLLSESKSTRKELRHLRMERDSI 235
Query: 511 GDLFNQLRLALQ 522
D ++L +L+
Sbjct: 236 EDKIHRLEWSLK 247
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,090,857
Number of extensions: 622382
Number of successful extensions: 1237
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1227
Number of HSP's successfully gapped: 4
Length of query: 579
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 473
Effective length of database: 11,501,117
Effective search space: 5440028341
Effective search space used: 5440028341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)