Os09g0424600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase protein.
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Os09g0424600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.18 | 0.34 | 6.98 | -1.95 | 1.45 | 64.9 | -0.339 | 134 | 0.113 | 0.115 | 15 | 90 | -- | -- |
| 53.21 | 0.342 | 7.53 | -0.791 | 1.45 | 1.35 | -0.355 | -- | 0.115 | 0.116 | 14.5 | 1884 | -- | -- |
| 53.68 | 0.341 | 6.98 | -1.93 | 1.45 | 64.9 | -- | 134 | 0.116 | 0.103 | 15.01 | 88 | -- | -- |
| 53.64 | 0.341 | 7.53 | -0.786 | 1.45 | 1.26 | -- | -- | 0.114 | 0.104 | 14.47 | 1913 | -- | -- |
| 185.74 | 0.635 | 6.89 | -2 | -- | 64.8 | -- | 134 | 0.142 | -- | 15.08 | 148 | -- | -- |
| 56.63 | 0.353 | 7.53 | -0.733 | 1.43 | -- | -0.195 | -- | 0.129 | 0.112 | -- | -- | -- | -- |
| 56.79 | 0.353 | 7.53 | -0.725 | 1.43 | -- | -- | -- | 0.13 | 0.106 | -- | -- | -- | -- |
| 182.14 | 0.629 | 7.5 | -0.819 | -- | 0.894 | -- | -- | 0.125 | -- | 14.2 | 6696 | -- | -- |
| 69.19 | 0.39 | 7.51 | -- | 1.43 | 0.861 | -- | -- | 0.206 | 0.0754 | 14.5 | 1799 | -- | -- |
| 185.21 | 0.636 | 7.5 | -0.68 | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
| 70.65 | 0.393 | 7.51 | -- | 1.42 | -- | -- | -- | 0.211 | 0.0775 | -- | -- | -- | -- |
| 196.71 | 0.653 | 7.48 | -- | -- | 0.476 | -- | -- | 0.222 | -- | 13.06 | 4144 | -- | -- |
| 197.4 | 0.656 | 7.48 | -- | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 7 |
| 2 | 47.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 6 | 48.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 9 |
| 35 | 48.76 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 7 |
| 41 | 48.83 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 5 |
| 45 | 48.98 | temperature | 25 | 10 | > th | dose dependent | sin | 5 | NA |
| 76 | 49.48 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 9 |
| 104 | 49.75 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 11 |
| 127 | 49.82 | temperature | 25 | 90 | < th | dose independent | rect. | 2 | 13 |
| 134 | 49.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 191 | 50.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 13 |
| 275 | 50.43 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 315 | 50.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 401 | 50.84 | temperature | 25 | 90 | < th | dose independent | sin | 4 | NA |
| 436 | 50.94 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 463 | 51.00 | temperature | 15 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 555 | 51.20 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 18 | 5 |
| 587 | 51.27 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 598 | 51.29 | temperature | 30 | 30 | < th | dose dependent | sin | 3 | NA |
| 610 | 51.31 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 643 | 51.38 | temperature | 15 | 720 | > th | dose independent | rect. | 11 | 10 |
| 674 | 51.43 | temperature | 15 | 30 | > th | dose independent | rect. | 11 | 23 |
| 690 | 51.47 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 6 |
| 696 | 51.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 730 | 51.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 733 | 51.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 11 |
| 751 | 51.59 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 11 |
| 807 | 51.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 829 | 51.71 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 14 |
| 842 | 51.75 | temperature | 15 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 861 | 51.77 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 865 | 51.78 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 871 | 51.79 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 13 | 19 |
| 914 | 51.84 | temperature | 15 | 30 | > th | dose independent | rect. | 13 | 23 |
| 938 | 51.88 | temperature | 25 | 90 | < th | dose independent | rect. | 16 | 10 |
| 950 | 51.90 | temperature | 20 | 270 | < th | dose dependent | sin | 14 | NA |