BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0424600 Os09g0424600|AK073882
(536 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G23890.1 | chr2:10170680-10173622 FORWARD LENGTH=554 746 0.0
AT1G75210.1 | chr1:28223990-28228751 FORWARD LENGTH=643 167 1e-41
AT5G48960.1 | chr5:19849645-19853382 FORWARD LENGTH=643 157 2e-38
>AT2G23890.1 | chr2:10170680-10173622 FORWARD LENGTH=554
Length = 553
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/475 (70%), Positives = 409/475 (86%)
Query: 59 AKRNYLSIPVAIKDMAKMNPQGIYVNKNVKLDDLQVYGFDYDYTLSHYSEHLQCLIYDLA 118
AK+ +L+IP AI M KMNPQGIYVNKN++LD++QVYGFDYDYTL+HYS HLQ LIYDLA
Sbjct: 77 AKQRFLNIPEAINSMPKMNPQGIYVNKNLRLDNIQVYGFDYDYTLAHYSSHLQSLIYDLA 136
Query: 119 KKHLVNELKYPESCLKYEYDHGFPIRGLYYDRLKGCLLKLDFFGSIEPDGCFFGRHKLSL 178
KKH+VNE +YP+ C ++EYD FPIRGLYYD+LKGCL+KLDFFGSIEPDGC+FGR KLS
Sbjct: 137 KKHMVNEFRYPDVCTQFEYDPTFPIRGLYYDKLKGCLMKLDFFGSIEPDGCYFGRRKLSR 196
Query: 179 SEIKELYGTRHIGRDQARQLVGLMDVFCFSEACLLADIVQHFVDARLEFDASYVYEDVNQ 238
EI+ +YGTRHIGRDQAR LVGLMD FCFSEACL+AD+VQ+FVDA+LEFDAS +Y DVN+
Sbjct: 197 KEIESMYGTRHIGRDQARGLVGLMDFFCFSEACLIADMVQYFVDAKLEFDASNIYNDVNR 256
Query: 239 SIQHVHRSGLIHRKILSEPQKYLIKNSQVFRFLKMLREKGKNLFLLTNSPFYFVDGGMSY 298
+IQHVHRSGL+HR IL++P +YL+KN Q+ RFL+ML++KGK LFLLTNSP+ FVDGGM +
Sbjct: 257 AIQHVHRSGLVHRGILADPNRYLLKNGQLLRFLRMLKDKGKKLFLLTNSPYNFVDGGMRF 316
Query: 299 LLEDEHFDGNSWRELFDVVIAQANKPTFYNSDHPFRVYDTQKDTLAFTAVDKFLPNEVYY 358
L+E+ G+SWRELFDVVIA+ANKP FY S+HPFR YD+++D LAFT VD F P +VYY
Sbjct: 317 LMEESFGFGDSWRELFDVVIAKANKPEFYTSEHPFRCYDSERDNLAFTKVDAFDPKKVYY 376
Query: 359 HGCLKSFLQITKWRGPEVIYFGDHLLSDLRGPAKAGWRTAAVIRELEDEIEIQNGDSYRF 418
HGCLKSFL+ITKW GPEVIYFGDHL SDLRGP+KAGWRTAA+I ELE EI+IQN DSYRF
Sbjct: 377 HGCLKSFLEITKWHGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELEREIQIQNDDSYRF 436
Query: 419 QQAKLSIIHDLLGKVHATVVSTEKGQVYRALLDELNAERRQCRSAMRDLFNSSFGATFLT 478
+QAK II +LLG+ HATV + ++ + ++LLDELN R++ R M+ +FN SFGATF+T
Sbjct: 437 EQAKFHIIQELLGRFHATVSNNQRSEACQSLLDELNNARQRARDTMKQMFNRSFGATFVT 496
Query: 479 DTGRESSFAYHIHQYADIYTSKLENFLSYAPESWLHPPHDIKIMPHNAKVPASLF 533
DTG+ES+F+YHIHQYAD+YTSK ENFL Y PE+WLH P+DIKIMPH+ KV ++LF
Sbjct: 497 DTGQESAFSYHIHQYADVYTSKPENFLLYRPEAWLHVPYDIKIMPHHVKVASTLF 551
>AT1G75210.1 | chr1:28223990-28228751 FORWARD LENGTH=643
Length = 642
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 233/490 (47%), Gaps = 59/490 (12%)
Query: 81 IYVNKNVKLDDLQVYGFDYDYTLSHY-SEHLQCLIYDLAKKHLVNELKYPESCLKYEYDH 139
I+ N+++ + ++ GFD DYTL+ Y SE + L YD + LV +L YP L++ +D
Sbjct: 149 IFCNRSLNMKNIIAVGFDMDYTLAQYKSETFESLAYDGTVRKLVYDLGYPNELLEWTFDW 208
Query: 140 GFPIRGLYYDRLKGCLLKLDFFGSIEPDGCFFGRHKLSLSEIKELYGTRHIGRDQARQLV 199
+ +RGL D+ +G +LK+D ++ + G +LS + E+YG+ +
Sbjct: 209 NYMVRGLVLDKKRGNILKMDRHKYVKV--AYHGFRELSKEDKVEIYGSSLVRDSFDEPDY 266
Query: 200 GLMD-VFCFSEACLLADIVQHFVDARLE-----FDASYVYEDVNQSIQHVHRSGLIHRKI 253
L+D +F +EA L A +V F D E D + +Y+DV ++ HR G + + +
Sbjct: 267 ALIDTLFSLAEAYLFAQLVD-FKDNNPEKVPKDVDYARMYKDVRAAVDLCHRDGTLKQMV 325
Query: 254 LSEPQKYLIKNSQVFRFLKMLREKGKNLFLLTNSPFYFVDGGMSYL-----LEDEHFDGN 308
EP +Y+ +++ + +KM+R+ G++ FL+TNS + + + M++L + H
Sbjct: 326 AKEPNRYINEDTTIVPLIKMIRDSGRSTFLVTNSLWDYTNIVMNFLCGGRTVHGPHTCNF 385
Query: 309 SWRELFDVVIAQANKPTFYNSDHPFRVYDTQKDTLAFTAVDKFLPN------------EV 356
W + FDVVI + KP F++ D +++ + + D P +
Sbjct: 386 DWLQYFDVVITGSAKPGFFHEDSRANLFEVEPQSGMLINTDNGTPMAQVGDPSPKILLKS 445
Query: 357 YYHGC----------LKSFLQITKWRGPEVIYFGDHLLSD-LRGPAKAGWRTAAVIRELE 405
GC L S L I +V+Y GDH+ D LR GWRT V+ ELE
Sbjct: 446 KDKGCRVFQGGNVGHLHSLLSIES--SSQVLYVGDHIYGDILRSKKILGWRTMLVVPELE 503
Query: 406 DEIEI------QNGDSYRFQQAKLSI---IHDLLGKVHATVVSTEKGQVYRALLDELNAE 456
E+E+ D + + S+ IH L + ++ + L +L ++
Sbjct: 504 KEVELLWELRNMRKDLILMRNERDSVEDKIHHLNWSLKFEDINENNKHEMLSALKDLESK 563
Query: 457 RRQCR----SAMRDL---FNSSFGATFLTDTGRESS-FAYHIHQYADIYTSKLENFLSYA 508
R + R A R+ F+ +G L TG +SS FA+ + ++A +YTS++ N Y+
Sbjct: 564 RDKVRQSHQQAQRECHQKFHKVWGQ--LMKTGYQSSRFAHQVERFACLYTSQVSNLRLYS 621
Query: 509 PESWLHPPHD 518
P+ + P D
Sbjct: 622 PDKYYRPSED 631
>AT5G48960.1 | chr5:19849645-19853382 FORWARD LENGTH=643
Length = 642
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/473 (28%), Positives = 219/473 (46%), Gaps = 49/473 (10%)
Query: 74 AKMNPQGIYVNKNVKLDDLQVYGFDYDYTLSHYS-EHLQCLIYDLAKKHLVNELKYPESC 132
A+ +P+GI+ ++ + L + G+D DYTL HY+ + YD ++L + +P
Sbjct: 158 AQHSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGKAYDYCMENL-KSMGFPVDG 216
Query: 133 LKYEYDHGFPIRGLYYDRLKGCLLKLDFFGSIEPDGCFFGRHKLSLSEIKELYGTRHIG- 191
L + D IRGL D+ KG L+K D FG ++ G LS + E+YG +
Sbjct: 217 LAF--DPELVIRGLMIDKEKGNLVKADRFGYVKR--AMHGTKMLSNKAVSEIYGRELVDL 272
Query: 192 RDQARQLVGLMDVFCFSEACLLADIVQH----FVDARL-EFDASYVYEDVNQSIQHVHRS 246
R+Q+R L F SEA A +V F+ A L D +Y+ V +++ H
Sbjct: 273 RNQSRWEF-LNTFFSVSEALAYAQMVDRLDDGFISADLGTLDYKGLYKAVAKALFRAHVE 331
Query: 247 GLIHRKILSEPQKYLIKNSQVFRFLKMLREKGKNLFLLTNSPFYFVDGGMSYLLEDEHFD 306
G + +I+S+P+ ++ + ++ L +E GK L L+TNS +++ D M + +
Sbjct: 332 GQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMKHSFNKFLPN 391
Query: 307 GNSWRELFDVVIAQANKPTFYNSDHPFRVYDTQKDTLAFTAVDKFLPNEVYYHGCLKSFL 366
WR+LFD+VI A KP F+ HP +Y+ K +Y G +
Sbjct: 392 DMDWRDLFDMVIVSARKPEFFQMSHP--LYEVVTGEGLMRPCFKAETGGLYSGGSAQMIE 449
Query: 367 QITKWRGPEVIYFGDHLLSDLR-GPAKAGWRTAAVIRELEDE--------------IEIQ 411
G E++Y GDH+ +D+ WRTA + RELE+E IE+
Sbjct: 450 SSLNVHGDEILYVGDHIYTDVSVSKVHLRWRTALICRELEEEYMALIGSRGHREELIELI 509
Query: 412 N-----GDSYRFQQAKLSIIHDLLGKVHATVVS--------TEKGQVYRALLDELNAERR 458
N GD F Q +L++ G+ T+ + TE Q ++ L+ +
Sbjct: 510 NQKEVVGD--LFNQLRLALQRRSKGRPAQTLAATNLDDQELTETMQKLLIVMQRLDDKIG 567
Query: 459 QCRSAMRDLFNSSFGATFLTDTG--RESSFAYHIHQYADIYTSKLENFLSYAP 509
+LFN +G FL+ G +S I +YADIYTS++ NFL+Y P
Sbjct: 568 LMLETDGELFNKRWG--FLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLNYTP 618
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,534,263
Number of extensions: 502783
Number of successful extensions: 1056
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1044
Number of HSP's successfully gapped: 3
Length of query: 536
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 433
Effective length of database: 8,282,721
Effective search space: 3586418193
Effective search space used: 3586418193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)