Os01g0250900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase protein.
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Os01g0250900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAD superfamily (subfamily IG) hydrolase, 5'-Nucleotidase protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.93 | 0.21 | 12.7 | -0.465 | 1.14 | 0.131 | -0.476 | 0.849 | 0.00574 | 19.4 | 18.06 | 10 | -- | -- |
| 22.94 | 0.225 | 12.7 | -0.479 | 1.13 | 0.123 | 0.133 | -- | 0.000354 | 19.5 | 16.7 | 14 | -- | -- |
| 20.39 | 0.21 | 12.7 | -0.478 | 1.15 | 0.134 | -- | 0.708 | 0.011 | 19.4 | 11.89 | 63 | -- | -- |
| 22.97 | 0.223 | 12.7 | -0.481 | 1.12 | 0.142 | -- | -- | 0.00692 | 19.4 | 16.76 | 13 | -- | -- |
| 75.38 | 0.407 | 12.7 | -0.504 | -- | 0.474 | -- | 0.552 | -0.00501 | -- | 6.78 | 7 | -- | -- |
| 23.17 | 0.226 | 12.7 | -0.479 | 1.19 | -- | 0.26 | -- | -0.00085 | 19.9 | -- | -- | -- | -- |
| 23.36 | 0.226 | 12.7 | -0.486 | 1.19 | -- | -- | -- | -0.000244 | 19.9 | -- | -- | -- | -- |
| 77.25 | 0.411 | 12.7 | -0.506 | -- | 0.471 | -- | -- | -0.00298 | -- | 6.329 | 6 | -- | -- |
| 29.06 | 0.252 | 12.7 | -- | 1.12 | 0.167 | -- | -- | 0.054 | 19.3 | 18.27 | 14 | -- | -- |
| 100.14 | 0.468 | 12.7 | -0.499 | -- | -- | -- | -- | -0.0164 | -- | -- | -- | -- | -- |
| 29.58 | 0.254 | 12.7 | -- | 1.19 | -- | -- | -- | 0.0539 | 19.8 | -- | -- | -- | -- |
| 83.7 | 0.426 | 12.7 | -- | -- | 0.465 | -- | -- | 0.0482 | -- | 5.71 | 2 | -- | -- |
| 106.71 | 0.482 | 12.7 | -- | -- | -- | -- | -- | 0.039 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.31 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 3 | 16.35 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 10 |
| 55 | 16.86 | temperature | 25.0 | 720 | < th | dose independent | sin | 5 | NA |
| 57 | 16.87 | radiation | 40.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 101 | 17.09 | temperature | 30.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 102 | 17.09 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 143 | 17.26 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 147 | 17.27 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 6 | 10 |
| 165 | 17.33 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 10 |
| 197 | 17.41 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 209 | 17.44 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 215 | 17.48 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 15 |
| 255 | 17.57 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 15 |
| 282 | 17.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 16 |
| 295 | 17.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 15 |
| 300 | 17.66 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 1 |
| 304 | 17.66 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 334 | 17.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 9 |
| 338 | 17.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 340 | 17.74 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 344 | 17.74 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 347 | 17.74 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 356 | 17.75 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 359 | 17.75 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 360 | 17.76 | temperature | 30.0 | 90 | < th | dose independent | sin | 23 | NA |
| 366 | 17.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 376 | 17.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 401 | 17.81 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 403 | 17.81 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 14 |
| 405 | 17.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 15 |
| 411 | 17.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 15 |
| 424 | 17.82 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 469 | 17.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 477 | 17.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 478 | 17.87 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 481 | 17.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 483 | 17.87 | radiation | 20.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 487 | 17.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 497 | 17.87 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 533 | 17.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 559 | 17.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 570 | 17.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 9 |
| 578 | 17.95 | temperature | 10.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 580 | 17.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 604 | 17.98 | temperature | 15.0 | 10 | > th | dose independent | rect. | 14 | 16 |
| 611 | 17.98 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 6 | 15 |
| 632 | 18.00 | radiation | 40.0 | 720 | < th | dose independent | rect. | 19 | 16 |
| 650 | 18.02 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 684 | 18.04 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 739 | 18.07 | temperature | 10.0 | 270 | > th | dose dependent | sin | 16 | NA |
| 751 | 18.08 | radiation | 40.0 | 720 | < th | dose independent | sin | 11 | NA |
| 752 | 18.08 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 806 | 18.10 | temperature | 15.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 812 | 18.10 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 827 | 18.11 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 854 | 18.12 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 876 | 18.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 891 | 18.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 15 |
| 905 | 18.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 936 | 18.16 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 13 |
| 960 | 18.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 961 | 18.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 9 |