BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0250900 Os01g0250900|AK065179
(579 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48960.1 | chr5:19849645-19853382 FORWARD LENGTH=643 766 0.0
AT1G75210.1 | chr1:28223990-28228751 FORWARD LENGTH=643 194 8e-50
AT2G23890.1 | chr2:10170680-10173622 FORWARD LENGTH=554 154 1e-37
>AT5G48960.1 | chr5:19849645-19853382 FORWARD LENGTH=643
Length = 642
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/492 (74%), Positives = 418/492 (84%), Gaps = 1/492 (0%)
Query: 84 FALTSSRLSRVDYLGESTKGDLNVRREHLDAFGGNGKSTLHGPIEEIAWQXXXXXXXXXX 143
F++T+S VDYLG+STKGDLN++ + L +FG +G++TL GPIEE+A
Sbjct: 90 FSVTTSSKYEVDYLGQSTKGDLNLKLDPLQSFG-DGQATLEGPIEEVARTEAQAAENLIR 148
Query: 144 XXGIADPFSVRHSPRGIFCTRTLNLRSISVIGYDMDYTLIHYNVMAWEGRAYDYGMANLK 203
GI PFS +HSPRGIFC+RTLNLRSIS IGYDMDYTL+HYNVMAWEG+AYDY M NLK
Sbjct: 149 ELGIQGPFSAQHSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGKAYDYCMENLK 208
Query: 204 GMGFPVDDLEFDPDLVIRGLIMDKDKGNLVKADRFGYIKRAMHGTQMLSTSAVSEIYGRE 263
MGFPVD L FDP+LVIRGL++DK+KGNLVKADRFGY+KRAMHGT+MLS AVSEIYGRE
Sbjct: 209 SMGFPVDGLAFDPELVIRGLMIDKEKGNLVKADRFGYVKRAMHGTKMLSNKAVSEIYGRE 268
Query: 264 LVDLRKESRWEFLNTLFSVSEAVMFMQMVDKLDQGLVPAELGPLDYKGLYNAVSRALFRA 323
LVDLR +SRWEFLNT FSVSEA+ + QMVD+LD G + A+LG LDYKGLY AV++ALFRA
Sbjct: 269 LVDLRNQSRWEFLNTFFSVSEALAYAQMVDRLDDGFISADLGTLDYKGLYKAVAKALFRA 328
Query: 324 HVEGQLKSEIMAEPERFVXXXXXXXXXXXXQKEAGKRLLLITNSDYHYTNKMMNHAFNRF 383
HVEGQLKSEIM++PE FV QKEAGK+LLLITNSDYHYT+KMM H+FN+F
Sbjct: 329 HVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMKHSFNKF 388
Query: 384 LPNDMAWRDLFEMVIVSARKPEFFQISHPLYEVVTNDGLMRPCFKANSGGLYSGGSAQMV 443
LPNDM WRDLF+MVIVSARKPEFFQ+SHPLYEVVT +GLMRPCFKA +GGLYSGGSAQM+
Sbjct: 389 LPNDMDWRDLFDMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKAETGGLYSGGSAQMI 448
Query: 444 EKSLDIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEDEFDALIRSHVQKEQLITL 503
E SL++HGDEILYVGDHIYTDVS SKVHLRWRTALICRELE+E+ ALI S +E+LI L
Sbjct: 449 ESSLNVHGDEILYVGDHIYTDVSVSKVHLRWRTALICRELEEEYMALIGSRGHREELIEL 508
Query: 504 IQQKEVVGDLFNQLRLALQRRTNSRPAQTLAATCMDDQELTESMQKLLIVMQRLDEKIAP 563
I QKEVVGDLFNQLRLALQRR+ RPAQTLAAT +DDQELTE+MQKLLIVMQRLD+KI
Sbjct: 509 INQKEVVGDLFNQLRLALQRRSKGRPAQTLAATNLDDQELTETMQKLLIVMQRLDDKIGL 568
Query: 564 MLESDGELFNKR 575
MLE+DGELFNKR
Sbjct: 569 MLETDGELFNKR 580
>AT1G75210.1 | chr1:28223990-28228751 FORWARD LENGTH=643
Length = 642
Score = 194 bits (494), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 133/402 (33%), Positives = 203/402 (50%), Gaps = 48/402 (11%)
Query: 160 IFCTRTLNLRSISVIGYDMDYTLIHYNVMAWEGRAYDYGMANL-KGMGFPVDDLE--FDP 216
IFC R+LN+++I +G+DMDYTL Y +E AYD + L +G+P + LE FD
Sbjct: 149 IFCNRSLNMKNIIAVGFDMDYTLAQYKSETFESLAYDGTVRKLVYDLGYPNELLEWTFDW 208
Query: 217 DLVIRGLIMDKDKGNLVKADRFGYIKRAMHGTQMLSTSAVSEIYGRELV-DLRKESRWEF 275
+ ++RGL++DK +GN++K DR Y+K A HG + LS EIYG LV D E +
Sbjct: 209 NYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFRELSKEDKVEIYGSSLVRDSFDEPDYAL 268
Query: 276 LNTLFSVSEAVMFMQMVDKLDQGL--VPAELGPLDYKGLYNAVSRALFRAHVEGQLKSEI 333
++TLFS++EA +F Q+VD D VP ++ DY +Y V A+ H +G LK +
Sbjct: 269 IDTLFSLAEAYLFAQLVDFKDNNPEKVPKDV---DYARMYKDVRAAVDLCHRDGTLKQMV 325
Query: 334 MAEPERFVXXXXXXXXXXXXQKEAGKRLLLITNSDYHYTNKMMN-----------HAFNR 382
EP R++ +++G+ L+TNS + YTN +MN H N
Sbjct: 326 AKEPNRYINEDTTIVPLIKMIRDSGRSTFLVTNSLWDYTNIVMNFLCGGRTVHGPHTCN- 384
Query: 383 FLPNDMAWRDLFEMVIVSARKPEFFQISH--PLYEVVTNDGLM----------------- 423
W F++VI + KP FF L+EV G++
Sbjct: 385 -----FDWLQYFDVVITGSAKPGFFHEDSRANLFEVEPQSGMLINTDNGTPMAQVGDPSP 439
Query: 424 RPCFKANSGG--LYSGGSAQMVEKSLDIHGD-EILYVGDHIYTDVSQSKVHLRWRTALIC 480
+ K+ G ++ GG+ + L I ++LYVGDHIY D+ +SK L WRT L+
Sbjct: 440 KILLKSKDKGCRVFQGGNVGHLHSLLSIESSSQVLYVGDHIYGDILRSKKILGWRTMLVV 499
Query: 481 RELEDEFDALIRSHVQKEQLITLIQQKEVVGDLFNQLRLALQ 522
ELE E + L ++ LI + +++ V D + L +L+
Sbjct: 500 PELEKEVELLWELRNMRKDLILMRNERDSVEDKIHHLNWSLK 541
>AT2G23890.1 | chr2:10170680-10173622 FORWARD LENGTH=554
Length = 553
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 175/386 (45%), Gaps = 21/386 (5%)
Query: 156 SPRGIFCTRTLNLRSISVIGYDMDYTLIHYNVMAWEGRAYDYGMANL-KGMGFP--VDDL 212
+P+GI+ + L L +I V G+D DYTL HY+ + YD ++ +P
Sbjct: 95 NPQGIYVNKNLRLDNIQVYGFDYDYTLAHYSSH-LQSLIYDLAKKHMVNEFRYPDVCTQF 153
Query: 213 EFDPDLVIRGLIMDKDKGNLVKADRFGYIKR--AMHGTQMLSTSAVSEIYGRELVDLRKE 270
E+DP IRGL DK KG L+K D FG I+ G + LS + +YG + +
Sbjct: 154 EYDPTFPIRGLYYDKLKGCLMKLDFFGSIEPDGCYFGRRKLSRKEIESMYGTRHIGRDQA 213
Query: 271 SRWEFLNTLFSVSEAVMFMQMVDKLDQGLVPAELGPLDYKGLYNAVSRALFRAHVEGQLK 330
L F SEA + MV Q V A+L D +YN V+RA+ H G +
Sbjct: 214 RGLVGLMDFFCFSEACLIADMV----QYFVDAKL-EFDASNIYNDVNRAIQHVHRSGLVH 268
Query: 331 SEIMAEPERFVXXXXXXXXXXXXQKEAGKRLLLITNSDYHYTNKMMNHAFNRFLPNDMAW 390
I+A+P R++ K+ GK+L L+TNS Y++ + M +W
Sbjct: 269 RGILADPNRYLLKNGQLLRFLRMLKDKGKKLFLLTNSPYNFVDGGMRFLMEESFGFGDSW 328
Query: 391 RDLFEMVIVSARKPEFFQISHPL--YEVVTNDGLMRPCFKANSGGLYSGGSAQMVEKSLD 448
R+LF++VI A KPEF+ HP Y+ ++ + +Y G + +
Sbjct: 329 RELFDVVIAKANKPEFYTSEHPFRCYDSERDNLAFTKVDAFDPKKVYYHGCLKSFLEITK 388
Query: 449 IHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEDEFDALIRSHVQKEQLITLIQQK- 507
HG E++Y GDH+++D+ + WRTA I ELE E +Q + Q K
Sbjct: 389 WHGPEVIYFGDHLFSDL-RGPSKAGWRTAAIIHELEREI------QIQNDDSYRFEQAKF 441
Query: 508 EVVGDLFNQLRLALQRRTNSRPAQTL 533
++ +L + + S Q+L
Sbjct: 442 HIIQELLGRFHATVSNNQRSEACQSL 467
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,354,187
Number of extensions: 404697
Number of successful extensions: 873
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 3
Length of query: 579
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 475
Effective length of database: 8,255,305
Effective search space: 3921269875
Effective search space used: 3921269875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)