BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0247900 Os01g0247900|AK109164
         (171 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0247900  AWPM-19-like family protein                         296   7e-81
Os01g0699900  Similar to Plasma membrane associated protein-...   151   2e-37
Os07g0422100  AWPM-19-like family protein                          84   6e-17
Os05g0381400  Similar to ABA induced plasma membrane protein...    76   1e-14

>Os01g0247900 AWPM-19-like family protein
          Length = 171

 Score =  296 bits (757), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 156/171 (91%), Positives = 156/171 (91%)

Query: 1   MAETLKPVALLLLILNLCMYVILAIIGGWAVNISIDRGFILGPGLRLPAHFHPMFFPIGN 60
           MAETLKPVALLLLILNLCMYVILAIIGGWAVNISIDRGFILGPGLRLPAHFHPMFFPIGN
Sbjct: 1   MAETLKPVALLLLILNLCMYVILAIIGGWAVNISIDRGFILGPGLRLPAHFHPMFFPIGN 60

Query: 61  WATGFFVVFSLLAGVVGIASGLVGFSHIRHWNYYSLQPXXXXXXXXXXXXXXXMGLACQE 120
           WATGFFVVFSLLAGVVGIASGLVGFSHIRHWNYYSLQP               MGLACQE
Sbjct: 61  WATGFFVVFSLLAGVVGIASGLVGFSHIRHWNYYSLQPAATTGLLAWALTVLAMGLACQE 120

Query: 121 ISLDRRNAKLGTMEAFTIVLTATQLFYVLAIHSGSRGPVPVERTHAVAAGY 171
           ISLDRRNAKLGTMEAFTIVLTATQLFYVLAIHSGSRGPVPVERTHAVAAGY
Sbjct: 121 ISLDRRNAKLGTMEAFTIVLTATQLFYVLAIHSGSRGPVPVERTHAVAAGY 171



>Os01g0699900 Similar to Plasma membrane associated protein-like
          Length = 156

 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 110/150 (73%)

Query: 5   LKPVALLLLILNLCMYVILAIIGGWAVNISIDRGFILGPGLRLPAHFHPMFFPIGNWATG 64
           LKPVA LLL+LN CMYVI+A +GGWA+N +I  G+ +G G+ LPA+F P++FP+GN ATG
Sbjct: 6   LKPVAGLLLVLNFCMYVIVAAVGGWAINHAIHTGYFIGSGMALPANFSPIYFPMGNAATG 65

Query: 65  FFVVFSLLAGVVGIASGLVGFSHIRHWNYYSLQPXXXXXXXXXXXXXXXMGLACQEISLD 124
           FFV+F+++AGVVG A+ L GF H+R W++ SL                 MGLA +EI L 
Sbjct: 66  FFVIFAVIAGVVGAAAALAGFHHVRAWSHESLPAAASSGFIAWTLTLLAMGLAVKEIDLH 125

Query: 125 RRNAKLGTMEAFTIVLTATQLFYVLAIHSG 154
            RNA+L TME+FTI+L+ATQLFY+LAIH G
Sbjct: 126 GRNARLKTMESFTIILSATQLFYLLAIHGG 155



>Os07g0422100 AWPM-19-like family protein
          Length = 173

 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 76/144 (52%), Gaps = 14/144 (9%)

Query: 12  LLILNLCMYVILAIIGGWAVNISIDRGFILGPGLRLPAHFHPMFFPIGNWATGFFVVFSL 71
           LL+LNL MY+I+     W +N  I+ G    PG+             GN AT +F+VF++
Sbjct: 12  LLVLNLIMYLIVIGFASWNLNHFIN-GQTNYPGVA------------GNGATFYFLVFAI 58

Query: 72  LAGVVGIASGLVGFSHIRHWNYYSLQPXXXXXXXXXXXXXXXMGLACQEISL-DRRNAKL 130
           LAGVVG AS L G  H+R W + SL                  GLAC+EI +   R  +L
Sbjct: 59  LAGVVGAASKLAGVHHVRAWRHDSLATNAASSLIAWAITALAFGLACKEIHIGGHRGWRL 118

Query: 131 GTMEAFTIVLTATQLFYVLAIHSG 154
             +EAF I+L  TQL YVL +H+G
Sbjct: 119 RVLEAFVIILAFTQLLYVLMLHTG 142



>Os05g0381400 Similar to ABA induced plasma membrane protein PM 19
          Length = 173

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 74/144 (51%), Gaps = 14/144 (9%)

Query: 12  LLILNLCMYVILAIIGGWAVNISIDRGFILGPGLRLPAHFHPMFFPIGNWATGFFVVFSL 71
           LL+LNL MY+I+     W +N  I+ G    PG+             GN AT +F+VF++
Sbjct: 12  LLVLNLIMYLIVIGFASWNLNHYIN-GETNHPGVA------------GNGATFYFLVFAI 58

Query: 72  LAGVVGIASGLVGFSHIRHWNYYSLQPXXXXXXXXXXXXXXXMGLACQEISL-DRRNAKL 130
           LAGVVG AS L G  H+R W  +SL                  GLAC+EI +   R  +L
Sbjct: 59  LAGVVGAASKLAGVHHVRSWGAHSLAAGAASALIAWAITALAFGLACKEIHIGGYRGWRL 118

Query: 131 GTMEAFTIVLTATQLFYVLAIHSG 154
             +EAF I+L  TQL YV  +H G
Sbjct: 119 RVLEAFVIILAFTQLLYVAMLHGG 142



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.144    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,964,413
Number of extensions: 177130
Number of successful extensions: 399
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 4
Length of query: 171
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,127,685
Effective search space: 933831745
Effective search space used: 933831745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 152 (63.2 bits)