FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0422100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AWPM-19-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.023) R2 : 0.0012
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0359 (0.0484) R2dN8 : 0.00156 R2N8 : 0.0012
σ : 0.433
deviance : 86.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.8 0.417 3.35 0.0765 0.26 -0.176 -0.364 -1.36 -0.0457 5.69 70.1 4491 -- --
81.11 0.419 3.35 0.0363 0.26 -0.214 -0.269 -- -0.0649 5.94 72.99 4250 -- --
78.95 0.414 3.35 0.0939 0.259 -0.11 -- -1.39 -0.0327 5.93 70 4846 -- --
81.04 0.419 3.37 0.0635 0.278 -0.291 -- -- -0.168 6.11 86 7222 -- --
82.2 0.422 3.36 0.0935 -- -0.12 -- -1.49 -0.0363 -- 70.25 5839 -- --
82.27 0.425 3.35 -0.00329 0.259 -- -0.416 -- -0.0435 5.56 -- -- -- --
82.65 0.426 3.35 -0.00426 0.259 -- -- -- -0.0415 5.97 -- -- -- --
84.28 0.428 3.38 0.066 -- -0.335 -- -- -0.177 -- 86 6983 -- --
81.01 0.419 3.38 -- 0.255 -0.302 -- -- -0.17 6.18 86.82 6983 -- --
86.12 0.434 3.35 0.00338 -- -- -- -- -0.0355 -- -- -- -- --
82.65 0.425 3.35 -- 0.259 -- -- -- -0.041 5.97 -- -- -- --
84.39 0.428 3.38 -- -- -0.308 -- -- -0.167 -- 86.79 6983 -- --
86.12 0.433 3.35 -- -- -- -- -- -0.0359 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.06 radiation 1.0 43200 < th dose dependent rect. 3 1
2 68.31 temperature 20.0 30 > th dose dependent rect. 2 1
3 68.37 atmosphere 1005.0 30 > th dose independent rect. 2 1
4 68.41 temperature 20.0 30 > th dose independent rect. 2 1
5 68.44 wind 3.0 30 < th dose dependent rect. 2 1
7 68.45 atmosphere 1000.0 30 > th dose dependent rect. 2 1
10 68.50 wind 3.0 30 < th dose independent rect. 2 1
19 68.61 radiation 1.0 4320 < th dose dependent rect. 3 1
20 68.62 humidity 90.0 30 > th dose independent rect. 2 1
22 68.65 humidity 60.0 30 > th dose dependent rect. 2 1
26 68.67 temperature 10.0 30 > th dose independent rect. 2 1
28 68.67 temperature 30.0 30 < th dose independent rect. 2 1
29 68.67 humidity 50.0 30 > th dose independent rect. 2 1
33 68.67 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 68.67 radiation 1.0 30 < th dose independent rect. 2 1
40 68.67 precipitation 0.1 30 < th dose independent rect. 2 1
41 68.67 temperature 10.0 30 > th dose independent rect. 3 23
43 68.67 radiation 1.0 30 < th dose dependent rect. 2 1
48 68.67 precipitation 0.1 30 < th dose dependent rect. 2 1
63 68.81 wind 9.0 1440 < th dose independent rect. 3 1
64 68.81 temperature 10.0 1440 > th dose independent rect. 3 1
67 68.81 temperature 30.0 1440 < th dose independent rect. 3 1
71 68.81 humidity 50.0 1440 > th dose independent rect. 3 1
80 68.81 atmosphere 995.0 1440 > th dose independent rect. 3 1
81 68.81 radiation 1.0 1440 < th dose independent rect. 3 1
101 68.81 temperature 10.0 1440 > th dose independent rect. 4 23
110 69.05 atmosphere 1015.0 30 < th dose dependent rect. 2 1
113 69.22 temperature 30.0 30 < th dose dependent rect. 2 1
114 69.23 atmosphere 1000.0 30 > th dose independent rect. 3 23
123 69.43 wind 1.0 30 > th dose independent rect. 2 1
172 70.63 precipitation 0.1 30 < th dose independent rect. 3 23
173 70.63 precipitation 0.1 30 < th dose dependent rect. 3 23
178 71.49 wind 9.0 30 < th dose independent rect. 3 23
180 71.64 humidity 80.0 10 < th dose independent rect. 6 2
186 71.93 radiation 10.0 30 > th dose independent rect. 7 1
191 72.29 humidity 80.0 10 < th dose independent rect. 24 8
204 73.03 humidity 50.0 30 > th dose independent rect. 3 23
234 73.93 temperature 25.0 30 > th dose independent rect. 7 1
243 74.09 radiation 10.0 10 > th dose independent rect. 16 16
283 75.11 humidity 90.0 90 < th dose independent rect. 2 1
284 75.13 temperature 30.0 30 < th dose independent rect. 3 23
296 75.52 radiation 10.0 30 < th dose dependent rect. 3 23
297 75.55 atmosphere 995.0 720 > th dose independent rect. 23 16
299 75.58 wind 1.0 10 < th dose independent rect. 12 15
329 75.81 wind 1.0 10 < th dose independent rect. 17 10
336 75.87 temperature 25.0 270 > th dose independent rect. 23 4
337 75.87 wind 1.0 10 > th dose independent rect. 8 23
339 75.95 precipitation 0.1 720 < th dose independent rect. 15 8
340 75.95 precipitation 0.1 720 < th dose dependent rect. 15 8
348 76.26 temperature 10.0 720 > th dose independent rect. 15 8
349 76.26 temperature 10.0 720 > th dose independent rect. 23 16
350 76.28 wind 1.0 10 < th dose independent rect. 6 21
359 76.36 wind 1.0 10 < th dose independent rect. 8 19
372 76.55 temperature 10.0 720 > th dose independent rect. 3 8
373 76.55 atmosphere 995.0 720 > th dose independent rect. 3 8
374 76.55 temperature 10.0 720 > th dose independent rect. 11 16
375 76.58 humidity 50.0 720 > th dose independent rect. 3 8
377 76.62 atmosphere 1015.0 30 < th dose independent rect. 3 23
380 76.68 atmosphere 995.0 720 > th dose independent rect. 7 8
382 76.69 wind 9.0 720 < th dose independent rect. 15 8
388 76.77 precipitation 0.1 720 < th dose independent rect. 19 8
390 76.77 precipitation 0.1 720 < th dose dependent rect. 19 8
391 76.81 wind 9.0 720 < th dose independent rect. 19 8
394 76.82 radiation 10.0 30 < th dose independent rect. 3 23
404 76.86 precipitation 0.1 720 < th dose independent rect. 11 16
405 76.86 precipitation 0.1 720 < th dose dependent rect. 11 16
410 76.93 humidity 90.0 10 < th dose dependent rect. 7 1
411 76.94 wind 9.0 720 < th dose independent rect. 3 8
415 76.97 wind 3.0 30 < th dose dependent rect. 2 6
424 77.03 temperature 25.0 270 > th dose dependent rect. 23 7
427 77.04 precipitation 0.1 720 < th dose independent rect. 15 16
428 77.04 precipitation 0.1 720 < th dose dependent rect. 15 16
432 77.06 atmosphere 1005.0 10 > th dose independent rect. 7 1
434 77.06 atmosphere 995.0 720 > th dose independent rect. 15 8
435 77.06 atmosphere 995.0 720 > th dose independent rect. 3 16
441 77.11 wind 9.0 720 < th dose independent rect. 15 16
442 77.12 atmosphere 995.0 720 > th dose independent rect. 15 16
451 77.21 humidity 90.0 90 < th dose independent rect. 1 3
452 77.22 humidity 90.0 90 < th dose dependent rect. 1 7
453 77.23 precipitation 0.1 720 < th dose independent rect. 7 8
454 77.23 precipitation 0.1 720 < th dose dependent rect. 7 8
457 77.25 temperature 10.0 720 > th dose independent rect. 7 8
458 77.25 atmosphere 1015.0 720 < th dose independent rect. 7 8
459 77.25 temperature 10.0 720 > th dose independent rect. 15 16
473 77.31 temperature 10.0 720 > th dose independent rect. 19 8
474 77.31 temperature 30.0 720 < th dose independent rect. 19 8
475 77.31 humidity 50.0 720 > th dose independent rect. 19 8
476 77.31 atmosphere 995.0 720 > th dose independent rect. 19 8
477 77.31 radiation 1.0 720 < th dose independent rect. 19 8
482 77.31 temperature 10.0 720 > th dose independent rect. 3 16
483 77.31 radiation 1.0 720 < th dose dependent rect. 19 8
492 77.34 humidity 80.0 14400 < th dose dependent rect. 4 5
495 77.37 temperature 20.0 30 > th dose dependent rect. 2 6
505 77.45 temperature 20.0 10 > th dose dependent rect. 7 1
519 77.58 atmosphere 1000.0 30 > th dose independent rect. 8 23
522 77.60 humidity 70.0 14400 > th dose independent rect. 8 1
542 77.73 wind 5.0 10 < th dose dependent rect. 7 1
553 77.80 humidity 70.0 14400 < th dose independent rect. 8 1
555 77.81 humidity 70.0 14400 > th dose independent rect. 4 5
556 77.81 humidity 70.0 14400 > th dose independent rect. 24 9
560 77.82 humidity 70.0 14400 > th dose independent rect. 6 3
578 77.89 wind 3.0 30 < th dose independent rect. 7 1
583 77.92 wind 1.0 10 > th dose independent sin 16 NA
611 77.95 temperature 10.0 30 > th dose dependent rect. 3 23
629 77.99 temperature 30.0 720 < th dose independent rect. 15 16
639 78.03 atmosphere 1000.0 30 > th dose dependent rect. 2 6
640 78.04 atmosphere 1005.0 30 > th dose independent rect. 2 6
642 78.05 humidity 70.0 14400 < th dose independent rect. 6 3
648 78.05 precipitation 0.1 720 < th dose independent rect. 3 8
654 78.05 precipitation 0.1 720 < th dose dependent rect. 3 8
662 78.08 precipitation 0.1 720 < th dose independent rect. 23 16
664 78.08 humidity 50.0 4320 > th dose dependent rect. 11 2
665 78.08 precipitation 0.1 720 < th dose dependent rect. 23 16
667 78.09 radiation 40.0 720 < th dose independent rect. 15 8
672 78.09 wind 1.0 30 < th dose dependent rect. 11 16
677 78.11 wind 1.0 30 > th dose independent rect. 7 1
687 78.11 humidity 90.0 4320 < th dose dependent rect. 11 2
696 78.14 radiation 10.0 10 > th dose independent sin 11 NA
698 78.15 precipitation 0.1 720 < th dose independent rect. 3 16
699 78.15 precipitation 0.1 720 < th dose dependent rect. 3 16
704 78.18 wind 7.0 14400 < th dose independent rect. 9 1
710 78.19 radiation 1.0 10 > th dose dependent rect. 7 1
711 78.19 wind 1.0 30 < th dose dependent rect. 21 6
721 78.21 atmosphere 1000.0 30 > th dose independent rect. 8 18
726 78.22 wind 1.0 4320 > th dose dependent rect. 5 2
729 78.23 wind 3.0 4320 < th dose independent rect. 5 2
733 78.23 atmosphere 995.0 30 > th dose dependent rect. 3 23
741 78.25 humidity 90.0 10 > th dose independent rect. 24 3
742 78.25 atmosphere 1015.0 720 < th dose independent rect. 3 8
762 78.27 wind 1.0 30 > th dose independent rect. 3 23
771 78.28 wind 9.0 30 < th dose dependent rect. 19 13
772 78.29 humidity 70.0 4320 > th dose independent rect. 10 2
784 78.30 wind 3.0 30 < th dose dependent rect. 2 11
787 78.32 wind 3.0 4320 > th dose independent rect. 5 2
788 78.32 humidity 80.0 10 < th dose independent rect. 20 12
802 78.34 wind 1.0 14400 < th dose dependent rect. 6 1
811 78.35 temperature 15.0 30 > th dose independent rect. 8 23
827 78.36 wind 9.0 4320 < th dose dependent rect. 5 2
836 78.38 wind 1.0 10 > th dose independent rect. 23 7
843 78.40 precipitation 0.1 10 < th dose independent rect. 7 1
844 78.40 humidity 70.0 4320 > th dose independent rect. 8 5
846 78.40 precipitation 0.1 10 < th dose dependent rect. 7 1
852 78.41 humidity 70.0 4320 < th dose independent rect. 10 2
870 78.43 humidity 90.0 4320 < th dose dependent rect. 5 10
875 78.44 temperature 10.0 10 > th dose independent rect. 7 1
877 78.44 temperature 30.0 10 < th dose independent rect. 7 1
878 78.44 humidity 50.0 10 > th dose independent rect. 7 1
880 78.44 atmosphere 995.0 10 > th dose independent rect. 7 1
881 78.44 atmosphere 1015.0 10 < th dose independent rect. 7 1
884 78.44 humidity 80.0 4320 < th dose independent rect. 7 6
890 78.44 atmosphere 995.0 10 > th dose dependent rect. 7 1
913 78.45 humidity 50.0 4320 > th dose dependent rect. 3 12
919 78.46 humidity 90.0 90 < th dose independent rect. 1 16
941 78.47 humidity 70.0 4320 > th dose independent rect. 4 9
972 78.47 humidity 50.0 30 > th dose dependent rect. 3 23
975 78.48 humidity 90.0 720 < th dose independent rect. 1 3
989 78.49 wind 9.0 1440 < th dose independent rect. 8 1
992 78.49 temperature 10.0 1440 > th dose independent rect. 8 1
997 78.49 humidity 50.0 1440 > th dose independent rect. 8 1
999 78.49 atmosphere 995.0 1440 > th dose independent rect. 8 1