BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0422100 Os07g0422100|U57639
(173 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04560.1 | chr1:1245070-1245888 FORWARD LENGTH=187 213 3e-56
AT5G46530.1 | chr5:18875576-18876779 FORWARD LENGTH=158 110 3e-25
AT5G18970.1 | chr5:6333714-6334539 REVERSE LENGTH=172 99 1e-21
AT1G29520.1 | chr1:10323735-10324525 FORWARD LENGTH=159 96 1e-20
>AT1G04560.1 | chr1:1245070-1245888 FORWARD LENGTH=187
Length = 186
Score = 213 bits (543), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/157 (66%), Positives = 126/157 (80%), Gaps = 1/157 (0%)
Query: 4 VGRNMLAPLLVLNLIMYLIVIGFASWNLNHFINGQTNYPGVAGNGATFYFLVFAILAGVV 63
VGRN+ APLL LNL+MYLIV+GFASW LN +INGQTN+P GNGAT +FL F+ILA VV
Sbjct: 5 VGRNIAAPLLFLNLVMYLIVLGFASWCLNKYINGQTNHPSFGGNGATPFFLTFSILAAVV 64
Query: 64 GAASKLAGVHHVRAWRHDSLATNAASSLIAWAITALAFGLACKEIHIGGHRGWRLRVLEA 123
G ASKLAG +H+R WR+DSLA ASS++AWAITALA GLACK+I+IGG RGWRL+++EA
Sbjct: 65 GVASKLAGANHIRFWRNDSLAAAGASSIVAWAITALAMGLACKQINIGGWRGWRLKMIEA 124
Query: 124 FVIILAFTQLLYVLMLHTGLFGGGDGA-YRDHDYGVG 159
F+IIL FTQLLY++++H G G YRD DY G
Sbjct: 125 FIIILTFTQLLYLMLIHAGSLSSKYGPGYRDQDYATG 161
>AT5G46530.1 | chr5:18875576-18876779 FORWARD LENGTH=158
Length = 157
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 88/140 (62%), Gaps = 18/140 (12%)
Query: 12 LLVLNLIMYLIVIGFASWNLNHFIN---------------GQTNYPGVAGNGATFYFLVF 56
LLVLN MY IV+G +W++N IN ++P GN AT +F++F
Sbjct: 13 LLVLNFCMYAIVLGIGAWSMNKAINHGFLIGADYSLPAHFSPIHFP--MGNAATGFFIMF 70
Query: 57 AILAGVVGAASKLAGVHHVRAWRHDSLATNAASSLIAWAITALAFGLACKEIHIGGHRGW 116
A++AGV GAAS ++G+ H+++W SL +++ IAW++T LA G CKEI + G R
Sbjct: 71 ALIAGVAGAASVISGISHLQSWTTTSLPAAVSAATIAWSLTLLAMGFGCKEIEL-GMRNA 129
Query: 117 RLRVLEAFVIILAFTQLLYV 136
RLR +EAF+IIL+ TQLLY+
Sbjct: 130 RLRTMEAFLIILSATQLLYI 149
>AT5G18970.1 | chr5:6333714-6334539 REVERSE LENGTH=172
Length = 171
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 85/156 (54%), Gaps = 14/156 (8%)
Query: 12 LLVLNLIMYLIVIGFASWNLNHFINGQTNYPGV-------------AGNGATFYFLVFAI 58
LL+LNL +Y ++ ASW +NH I GN AT +F++F +
Sbjct: 13 LLMLNLGLYFVITIIASWAVNHGIERTRESASTLSLPAKIFPIYFPVGNMATGFFVIFTL 72
Query: 59 LAGVVGAASKLAGVHHVRAWRHDSLATNAASSLIAWAITALAFGLACKEIHIGGHRGWRL 118
+AGVVG A+ L G+ +V W +L + AASSLI+W++T LA GLACKEI+IG L
Sbjct: 73 IAGVVGMATSLTGIINVLQWDSPNLHSAAASSLISWSLTLLAMGLACKEINIGWTEA-NL 131
Query: 119 RVLEAFVIILAFTQLLYVLMLHTGLFGGGDGAYRDH 154
R LE II++ TQLL +H G+ R H
Sbjct: 132 RTLEVLTIIVSATQLLCTGAIHAGVGETVASGERPH 167
>AT1G29520.1 | chr1:10323735-10324525 FORWARD LENGTH=159
Length = 158
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 88/144 (61%), Gaps = 18/144 (12%)
Query: 12 LLVLNLIMYLIVIGFASWNLNHFIN---------------GQTNYPGVAGNGATFYFLVF 56
LLVLN MY+IV+G W +N I+ +P GN AT +F++F
Sbjct: 13 LLVLNFCMYVIVLGIGGWAMNRAIDHGFEVGPNLELPAHFSPIYFP--MGNAATGFFVIF 70
Query: 57 AILAGVVGAASKLAGVHHVRAWRHDSLATNAASSLIAWAITALAFGLACKEIHIGGHRGW 116
A+LAGVVGAAS ++G+ H+R+W SL A ++ IAW +T LA G A KEI + G R
Sbjct: 71 ALLAGVVGAASTISGLSHIRSWTVGSLPAAATAATIAWTLTVLAMGFAWKEIELQG-RNA 129
Query: 117 RLRVLEAFVIILAFTQLLYVLMLH 140
+LR +EAF+IIL+ TQL+Y+ +H
Sbjct: 130 KLRTMEAFLIILSVTQLIYIAAVH 153
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,718,870
Number of extensions: 144980
Number of successful extensions: 564
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 4
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)