Os01g0247900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AWPM-19-like family protein.
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Os01g0247900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AWPM-19-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279.94 | 0.786 | 3.19 | -0.208 | 0.28 | -2.73 | 0.453 | -6.8 | 0.151 | 9.81 | 1016 | 2066 | -- | -- |
| 302.08 | 0.809 | 3.15 | 0.0278 | 0.154 | -1.73 | 0.562 | -- | 0.189 | 12.3 | 1014 | 1389 | -- | -- |
| 280.69 | 0.78 | 3.19 | -0.195 | 0.281 | -2.75 | -- | -6.91 | 0.151 | 9.52 | 1016 | 2066 | -- | -- |
| 299.5 | 0.806 | 3.15 | -0.0709 | 0.298 | -0.797 | -- | -- | 0.202 | 9.5 | 1014 | 2560 | -- | -- |
| 285.33 | 0.787 | 3.2 | -0.193 | -- | -2.81 | -- | -6.94 | 0.154 | -- | 1016 | 2066 | -- | -- |
| 305.17 | 0.819 | 3.17 | -0.126 | 0.293 | -- | 0.707 | -- | 0.144 | 11 | -- | -- | -- | -- |
| 307.14 | 0.821 | 3.16 | -0.0991 | 0.297 | -- | -- | -- | 0.145 | 10.3 | -- | -- | -- | -- |
| 304.57 | 0.813 | 3.16 | -0.0831 | -- | -0.808 | -- | -- | 0.195 | -- | 1014 | 2469 | -- | -- |
| 299.62 | 0.806 | 3.15 | -- | 0.297 | -0.79 | -- | -- | 0.199 | 9.93 | 1014 | 2554 | -- | -- |
| 312.5 | 0.826 | 3.17 | -0.104 | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
| 307.39 | 0.82 | 3.16 | -- | 0.297 | -- | -- | -- | 0.156 | 10.3 | -- | -- | -- | -- |
| 304.76 | 0.813 | 3.16 | -- | -- | -0.823 | -- | -- | 0.214 | -- | 1014 | 2600 | -- | -- |
| 312.79 | 0.826 | 3.17 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 278.50 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 2 | 278.74 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 8 | 281.28 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 9 | 281.37 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 13 | 281.59 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 19 | 281.59 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 25 | 281.92 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 2 | 5 |
| 42 | 284.70 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 10 | 4 |
| 43 | 284.86 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 47 | 285.07 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 9 |
| 48 | 285.09 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 63 | 285.48 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 3 |
| 70 | 285.74 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 71 | 285.80 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 4 |
| 72 | 285.85 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 21 |
| 81 | 285.94 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 85 | 285.97 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 91 | 286.03 | radiation | 10.0 | 270 | < th | dose independent | rect. | 11 | 3 |
| 94 | 286.16 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 20 |
| 147 | 286.77 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 3 |
| 162 | 286.83 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 8 |
| 173 | 286.87 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 6 |
| 225 | 287.17 | atmosphere | 1010.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 237 | 287.24 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 238 | 287.24 | wind | 5.0 | 10 | > th | dose independent | rect. | 8 | 1 |
| 240 | 287.24 | temperature | 20.0 | 30 | < th | dose independent | rect. | 6 | 8 |
| 242 | 287.24 | wind | 5.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 285 | 287.36 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 13 | 1 |
| 291 | 287.37 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 6 | 9 |
| 292 | 287.38 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 299 | 287.38 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 347 | 287.53 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 350 | 287.53 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 393 | 287.74 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 23 |
| 409 | 287.78 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 24 | 21 |
| 422 | 287.84 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 18 |
| 442 | 287.93 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 13 | 9 |
| 446 | 287.95 | radiation | 10.0 | 30 | < th | dose independent | sin | 21 | NA |
| 510 | 288.27 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 524 | 288.33 | radiation | 10.0 | 30 | > th | dose independent | sin | 21 | NA |
| 525 | 288.33 | atmosphere | 1010.0 | 1440 | > th | dose dependent | no | NA | NA |
| 548 | 288.43 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 21 |
| 585 | 288.55 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 626 | 288.76 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 14 |
| 628 | 288.78 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 629 | 288.78 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 636 | 288.80 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 650 | 288.86 | radiation | 30.0 | 30 | < th | dose dependent | sin | 20 | NA |
| 684 | 289.02 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 686 | 289.02 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 688 | 289.03 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 692 | 289.04 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 18 |
| 705 | 289.07 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 711 | 289.08 | atmosphere | 1015.0 | 1440 | < th | dose independent | no | NA | NA |
| 714 | 289.08 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 715 | 289.08 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 739 | 289.11 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 815 | 289.31 | radiation | 1.0 | 10 | > th | dose dependent | sin | 18 | NA |
| 876 | 289.48 | radiation | 10.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 898 | 289.57 | radiation | 10.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 907 | 289.60 | atmosphere | 1010.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 910 | 289.61 | radiation | 10.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 966 | 289.81 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 12 | 1 |