BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0222500 Os01g0222500|AK072778
         (231 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0222500  Similar to Vacuolar ATP synthase subunit E (EC...   416   e-117
Os01g0659200  Similar to Vacuolar ATP synthase subunit E (EC...   299   9e-82
Os05g0480700  Similar to Vacuolar ATP synthase subunit E (EC...   252   2e-67

>Os01g0222500 Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase
           E subunit) (Vacuolar proton pump E subunit)
          Length = 231

 Score =  416 bits (1070), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/231 (90%), Positives = 209/231 (90%)

Query: 1   MMNDGDVARQLKQMTDFIRXXXXXXXXXXXXXXXXXXXXXXLQLVEAEKKRIRLEFERNE 60
           MMNDGDVARQLKQMTDFIR                      LQLVEAEKKRIRLEFERNE
Sbjct: 1   MMNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNE 60

Query: 61  KQGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIV 120
           KQGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIV
Sbjct: 61  KQGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIV 120

Query: 121 QSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHY 180
           QSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHY
Sbjct: 121 QSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHY 180

Query: 181 EAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRRSLLGQVAA 231
           EAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRRSLLGQVAA
Sbjct: 181 EAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRRSLLGQVAA 231



>Os01g0659200 Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase
           E subunit) (Vacuolar proton pump E subunit)
          Length = 230

 Score =  299 bits (766), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/230 (64%), Positives = 175/230 (76%)

Query: 2   MNDGDVARQLKQMTDFIRXXXXXXXXXXXXXXXXXXXXXXLQLVEAEKKRIRLEFERNEK 61
           MND DVA+Q++QM  FIR                      LQLVEAEKK+IR E+ER EK
Sbjct: 1   MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 62  QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
           Q +++KKIEYS QLNASR++VLQAQDDL  SM E A K+LL ++ +HH YKNLL+  +VQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120

Query: 122 SLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHYE 181
            LLRLKEPAV+LRCRKED   VESVL SAKNEYA KA ++ PEI+VD +VYLPP+PS ++
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPPSPSSHD 180

Query: 182 AHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRRSLLGQVAA 231
           +H   CSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIR+ L GQV A
Sbjct: 181 SHERFCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKLLFGQVTA 230



>Os05g0480700 Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase
           E subunit) (Vacuolar proton pump E subunit)
          Length = 231

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/227 (54%), Positives = 162/227 (71%)

Query: 2   MNDGDVARQLKQMTDFIRXXXXXXXXXXXXXXXXXXXXXXLQLVEAEKKRIRLEFERNEK 61
           MND DV +Q++QM  FI                       LQLVE+EK+RIR ++ER  K
Sbjct: 1   MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60

Query: 62  QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
           Q D+ +KIEYS QLNA+R++VL+AQD +   M E AGK LL +T+D   Y+ +L+  IVQ
Sbjct: 61  QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120

Query: 122 SLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHYE 181
           SLLRL+EP+V+LRCR+ DR  VESVLE+AK EYA+KA +  P+I++D  VYLPP  +  +
Sbjct: 121 SLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGKVYLPPPKTARD 180

Query: 182 AHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRRSLLGQ 228
           AHGP CSGGVV+AS+DGKIVC+NTLDAR+E+ F++KLPEIR+ L  Q
Sbjct: 181 AHGPFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIRKKLFSQ 227



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,453,536
Number of extensions: 234579
Number of successful extensions: 671
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 3
Length of query: 231
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 133
Effective length of database: 11,918,829
Effective search space: 1585204257
Effective search space used: 1585204257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)