BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0218700 Os01g0218700|AK064992
(771 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0218700 ABC transporter, transmembrane region, type 1 ... 1368 0.0
Os05g0107600 Similar to Peroxisomal ABC transporter 167 2e-41
AK119849 137 2e-32
Os01g0966100 Similar to Peroxisomal ABC transporter 116 6e-26
>Os01g0218700 ABC transporter, transmembrane region, type 1 domain containing
protein
Length = 771
Score = 1368 bits (3540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/771 (88%), Positives = 679/771 (88%)
Query: 1 MGLPTAAAPACCFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVCFGSPLPLHARFH 60
MGLPTAAAPACCF GVCFGSPLPLHARFH
Sbjct: 1 MGLPTAAAPACCFPSTSSSSPRLLLLPLQPPPPQPPRRRRRLVSPGVCFGSPLPLHARFH 60
Query: 61 WPHAVASSSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRVETDLKTLARRFWK 120
WPHAVASSSM KRVETDLKTLARRFWK
Sbjct: 61 WPHAVASSSMRRRGRRRRATAPPAAAAAGEATGDGGGSGPGAEDKRVETDLKTLARRFWK 120
Query: 121 VAAPYWWSEDKVQXXXXXXXXXXXXXXXXGISVGFNFLGRDFYNALADKDQEQFTKQLLY 180
VAAPYWWSEDKVQ GISVGFNFLGRDFYNALADKDQEQFTKQLLY
Sbjct: 121 VAAPYWWSEDKVQARLRLAAVFALTLATTGISVGFNFLGRDFYNALADKDQEQFTKQLLY 180
Query: 181 YLGGFAVGIPFFVLRDYARETLSLRWRSWMTSYYMKRYFKNRTFYKIQSQSLIDNPDQRI 240
YLGGFAVGIPFFVLRDYARETLSLRWRSWMTSYYMKRYFKNRTFYKIQSQSLIDNPDQRI
Sbjct: 181 YLGGFAVGIPFFVLRDYARETLSLRWRSWMTSYYMKRYFKNRTFYKIQSQSLIDNPDQRI 240
Query: 241 NDDLSAFTGTALAFSLTFLNAAVDLISFSNILYGIYPPLFIVLIVYSLGGTGISIFLGKN 300
NDDLSAFTGTALAFSLTFLNAAVDLISFSNILYGIYPPLFIVLIVYSLGGTGISIFLGKN
Sbjct: 241 NDDLSAFTGTALAFSLTFLNAAVDLISFSNILYGIYPPLFIVLIVYSLGGTGISIFLGKN 300
Query: 301 LVNLNFMQEKKEADFRYGLVRVRENAESIAFYGGEENELQLLLDRFRRAFENLSELLIAS 360
LVNLNFMQEKKEADFRYGLVRVRENAESIAFYGGEENELQLLLDRFRRAFENLSELLIAS
Sbjct: 301 LVNLNFMQEKKEADFRYGLVRVRENAESIAFYGGEENELQLLLDRFRRAFENLSELLIAS 360
Query: 361 RNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILSDFSLIVFQFQSI 420
RNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILSDFSLIVFQFQSI
Sbjct: 361 RNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILSDFSLIVFQFQSI 420
Query: 421 SAFSAVIDRLGEFDDLLDGNGSSLSKPDNIDGINIIFKSTGPTVLSSNGSPTQSNPSMVL 480
SAFSAVIDRLGEFDDLLDGNGSSLSKPDNIDGINIIFKSTGPTVLSSNGSPTQSNPSMVL
Sbjct: 421 SAFSAVIDRLGEFDDLLDGNGSSLSKPDNIDGINIIFKSTGPTVLSSNGSPTQSNPSMVL 480
Query: 481 EICNLTLLTPRSGNILITDLTMELKEKDHLLVMGPSGSGKTSLLRALAGLWTSGTGDIIY 540
EICNLTLLTPRSGNILITDLTMELKEKDHLLVMGPSGSGKTSLLRALAGLWTSGTGDIIY
Sbjct: 481 EICNLTLLTPRSGNILITDLTMELKEKDHLLVMGPSGSGKTSLLRALAGLWTSGTGDIIY 540
Query: 541 HVRGSMELQTSNSGPDEPSNIQSNGEELLQSSKQRRDNGIFFVPQRPYMVLGTLRQQLLY 600
HVRGSMELQTSNSGPDEPSNIQSNGEELLQSSKQRRDNGIFFVPQRPYMVLGTLRQQLLY
Sbjct: 541 HVRGSMELQTSNSGPDEPSNIQSNGEELLQSSKQRRDNGIFFVPQRPYMVLGTLRQQLLY 600
Query: 601 PTWTEDVCHSSNNDPQSTDPLTFEVSTSDGVGSKSEMPTTDELIRVLEAVKLGYILPRFN 660
PTWTEDVCHSSNNDPQSTDPLTFEVSTSDGVGSKSEMPTTDELIRVLEAVKLGYILPRFN
Sbjct: 601 PTWTEDVCHSSNNDPQSTDPLTFEVSTSDGVGSKSEMPTTDELIRVLEAVKLGYILPRFN 660
Query: 661 GLDSMHDWASVLSLGEQQXXXXXXXXXXKPTLVLLDESTSALDDMNERHLYSQIEAAGIT 720
GLDSMHDWASVLSLGEQQ KPTLVLLDESTSALDDMNERHLYSQIEAAGIT
Sbjct: 661 GLDSMHDWASVLSLGEQQRLAFARLLLAKPTLVLLDESTSALDDMNERHLYSQIEAAGIT 720
Query: 721 YISIGHRKTLHKFHNKVLYISNSDSTDSNPRNWYLKPTEQMSIEESSSFAS 771
YISIGHRKTLHKFHNKVLYISNSDSTDSNPRNWYLKPTEQMSIEESSSFAS
Sbjct: 721 YISIGHRKTLHKFHNKVLYISNSDSTDSNPRNWYLKPTEQMSIEESSSFAS 771
>Os05g0107600 Similar to Peroxisomal ABC transporter
Length = 1130
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 157/556 (28%), Positives = 241/556 (43%), Gaps = 88/556 (15%)
Query: 223 TFYKI-QSQSLIDNPDQRINDDLSAFTGTALAFSLTFLNAAVDLISFSNILYGIYPPLFI 281
+YKI I NP+QRI D+ F L A + + ++ L P ++
Sbjct: 2 VYYKISHVDHRISNPEQRIASDIPKFCSELSELVQDDLAAVAEGLIYTWRLCSYASPKYM 61
Query: 282 VLIV-YSLGGTGISIFLGKNLVNLNFMQEKKEADFRYGLVRVRENAESIAFYGGEENELQ 340
+ IV Y L G L +++ E D+R R+R +AES+AFYGGE E
Sbjct: 62 LWIVGYILVAGGAIRNFSPAFGKLKSTEQQLEGDYRQLHSRLRTHAESVAFYGGENREAY 121
Query: 341 LLLDRFRRAFENLSELLIASRNLEFFTNGY-RYLIQILPAAVVAPMYFSGKIEFGVINQS 399
++ RF+ +L+ +L + + + +Y + ++ +FSG + + S
Sbjct: 122 YIMQRFQALIGHLNCVLHENWWFGMIQDFFLKYFGATVAVVLIIEPFFSGHLR---PDSS 178
Query: 400 VSAFNHILSDF----SLIVFQFQSISAFSAVIDRLGEFDDLLDGNGSSLSKPDNIDGINI 455
+LS+ S+I+ FQS+ S RL D L + G+
Sbjct: 179 TLGRAEMLSNLRYHTSVIISLFQSLGILSISTRRLNILSGYADRIRELLDVSRELSGVR- 237
Query: 456 IFKSTGPTVLSSNGSP----TQSNPSMVLEICNLTLLTPRSGNILITDLTMELKEKDHLL 511
L+ N S +++N +E + ++TP S N+L+ DLT+ ++ +LL
Sbjct: 238 ------DKSLNHNSSAGNYISEANH---IEFSGVKVVTPAS-NVLVDDLTLRVERGSNLL 287
Query: 512 VMGPSGSGKTSLLRALAGLWTSGTGDIIYHVRGSMELQTSNSGPDEPSNIQSNGEELLQS 571
+ GP+GSGK+SL R L GLW +G I+ P S++
Sbjct: 288 ITGPNGSGKSSLFRVLGGLWPLVSGHIV--------------KPGVGSDLNKE------- 326
Query: 572 SKQRRDNGIFFVPQRPYMVLGTLRQQLLYPTWTEDVCHSSNNDPQSTDPLTFEVSTSDGV 631
IF+VPQRPY +GTLR+QL+YP T D Q +PL++
Sbjct: 327 --------IFYVPQRPYTAVGTLREQLIYPL-TAD---------QEIEPLSY-------- 360
Query: 632 GSKSEMPTTDELIRVLEAVKLGYILPRFNGLDSMHDWASVLSLGEQQXXXXXXXXXXKPT 691
D ++ +L+ V L Y+L R+ LD +W LSLGEQQ KP
Sbjct: 361 ---------DGMVDLLKNVDLEYLLERYP-LDKEVNWGDELSLGEQQRLGMARLFYHKPK 410
Query: 692 LVLLDESTSALD-DMNERHLYSQIEAAGITYISIGHRKTLHKFHNKVLYISNSDSTDSNP 750
+LDE TSA+ DM ER ++ A G + I+I HR L FH+ VL + D
Sbjct: 411 FAILDECTSAVTIDMEER-FCKKVRAMGTSCITISHRPALVAFHDIVLSLDGEGGWDVQH 469
Query: 751 RNWYLKPTEQMSIEES 766
R + S EES
Sbjct: 470 R----RDDSSFSTEES 481
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 156/574 (27%), Positives = 245/574 (42%), Gaps = 95/574 (16%)
Query: 202 LSLRWRSWMTSYYMKRYFKNRTFYKI--QSQSLIDNPDQRINDDLSAFTGTALAFSLTFL 259
L+L WR +T++ ++ Y K FYK+ S ID DQR+ D+ T +
Sbjct: 637 LALGWRIRLTNHLLQYYLKRNAFYKVFNMSGKSID-ADQRLTLDVDKLTTDLAGLVTGMV 695
Query: 260 NAAVDLISFS---NILYGIYPPLFIVLIVYSLGGTGISIFLGKNLVNLNFMQEKKEADFR 316
VD++ F+ +L G +L Y L G G + + +L +++ E FR
Sbjct: 696 KPLVDILWFTWRMKLLSGRRG--VAILYAYMLLGLGFLRAVSPDFGHLAGQEQELEGTFR 753
Query: 317 YGLVRVRENAESIAFYGGEENELQLLLDRFRRAFENLSELLIASRNLEFFTNGYRYLIQI 376
+ R+R +AESIAF+GG E ++ +F + ++ S++L+ + L + + + +
Sbjct: 754 FMHSRLRTHAESIAFFGGGSREKAIVEAKFMKLLDH-SKILLRKQWLYGIVDDF--VTKQ 810
Query: 377 LPAAVVAPMYFSGKIEFG---VINQSVSAFNHILSDFSLIVFQFQSISAFSAVIDRLGEF 433
LP V + +E + + H L + +V Q S AF ++D +F
Sbjct: 811 LPHNVTWGLSLLYALEHKGDRALTSTQGELAHALRFLASVVSQ--SFIAFGDILDLHKKF 868
Query: 434 DDLLDGNGSSLSKPDNIDGINIIFKSTGPTVLSSNGSPTQSNPSMVLEICN---LTLLTP 490
+L GIN IF+ +S + S+ + E + + ++TP
Sbjct: 869 LEL-------------SGGINRIFELEELLRVSQRDTFVPSDATSAEETISFHEVDIVTP 915
Query: 491 RSGNILITDLTMELKEKDHLLVMGPSGSGKTSLLRALAGLWTSGTGDIIYHVRGSMELQT 550
S +L + L+ + + LL+ GP+GSGK+S+ R L LW +G +
Sbjct: 916 -SQKLLASKLSCNVVQGKSLLLTGPNGSGKSSIFRVLRDLWPVCSGRVT----------- 963
Query: 551 SNSGPDEPSNIQSNGEELLQSSKQRRDNGIFFVPQRPYMVLGTLRQQLLYPTWTED---- 606
+PS+ G+F VPQRPY LGTLR Q++YP E+
Sbjct: 964 ------KPSD------------------GMFHVPQRPYTSLGTLRDQIIYPLSREEAEMK 999
Query: 607 VCHSSNNDPQSTDPLTFEVSTSDGVGSKSEMPTTDELIRVLEAVKLGYILPRFNGLDSMH 666
+C N DG GS + D L +L V+L Y+L R G DS
Sbjct: 1000 ICSLYN----------------DGNGSSASNLLDDHLKTILVNVRLVYLLER-EGWDSTS 1042
Query: 667 DWASVLSLGEQQXXXXXXXXXXKPTLVLLDESTSALDDMNERHLYSQIEAAGITYISIGH 726
+W VLSLGEQQ P +LDE T+A E HLY + GIT I+
Sbjct: 1043 NWEDVLSLGEQQRLGMARLFFHHPKFGILDECTNATSVDVEEHLYKLATSMGITVITSSQ 1102
Query: 727 RKTLHKFHNKVLYISNSDSTDSNPRNWYLKPTEQ 760
R L FH+ L + + + NW L Q
Sbjct: 1103 RPALIPFHSLELKLIDGEG------NWELCEIHQ 1130
>AK119849
Length = 842
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 155/600 (25%), Positives = 248/600 (41%), Gaps = 98/600 (16%)
Query: 197 YARETLSLRWRSWMTSYYMKRYFKNR-TFYKIQS--QSLIDNPDQRINDDLSAFTGTALA 253
+ + +S+ +R+ +T Y Y + +YK+ + + DQ I DL+ F +A +
Sbjct: 228 FLQSKVSIAFRTRLTRYIHDLYLNDHLNYYKLSNLDGGVGQGADQFITQDLTLFCASAAS 287
Query: 254 FSLTFLNAAVDLISFSNILYGIYPPLFI--VLIVYSLGGTGISIFLGKNLVNLNFMQEKK 311
+ VDL F+ L+ PL + +L Y L T I L L ++ ++
Sbjct: 288 LYSSLGKPFVDLCVFNYQLFRSLGPLALTGLLSNYFLTAT-ILRRLSPPFGKLKAVEGRR 346
Query: 312 EADFRYGLVRVRENAESIAFYGGEENELQLLLDRFR---RAFENLSELLIASRNLEFFT- 367
E DFR R+ NAE +AFYGG++ E L F+ E + L I LE F
Sbjct: 347 EGDFRALHARLIANAEEVAFYGGDQMEKHFLERGFKDLKHWMEGIYSLKIRYNMLEDFVL 406
Query: 368 ----NGYRYLIQ----ILPA----AVVAPMYFSGKI--EFGVINQSVSAFNHILS---DF 410
+ + YLI LPA VA M K E + ++ +LS
Sbjct: 407 KYSWSAFGYLITSLPVFLPAWGGLDAVAEMASGEKTGRERSRMKDFITNKRLMLSLADAG 466
Query: 411 SLIVFQFQSISAFSAVIDRLGEFDDLLDGNGSSLSKPDNIDGINIIFKSTGPTVLSSN-- 468
+++ + +S + R+ L + P T P + S +
Sbjct: 467 GRMMYSIKDLSELAGYTSRVYTLISTLHRVHADAYYPP---------PGTRPELYSVSDV 517
Query: 469 -GSPTQSNPSMVLEICNLTL--LTPRSGNILITDLTMELKEKDHLLVMGPSGSGKTSLLR 525
G+ + + LE + L P G+ L+ L+ + +HLL+ GP+G GK+++ R
Sbjct: 518 QGTVHKGFDGIRLEHVPIVAPALHPMGGDDLLESLSFIVHSGEHLLITGPNGVGKSAVAR 577
Query: 526 ALAGLWTSGTGDIIYHVRGSMELQTSNSGPDEPSNIQSNGEELLQSSKQRRDNGIFFVPQ 585
+AGLW + G + S +SNG +GI F+PQ
Sbjct: 578 IVAGLWPTYRGLV--------------------SRPRSNGV-----------DGIMFLPQ 606
Query: 586 RPYMVLGTLRQQLLYPTWTEDVCHSSNNDPQSTDPLTFEVSTSDGVGSKSEMPTTDELIR 645
RPY+ GTLR Q++YP D+ + D FE+S +
Sbjct: 607 RPYLSTGTLRDQVIYPHTAVDMKDAGRRD--------FELS------------------Q 640
Query: 646 VLEAVKLGYILPRFNGLDSMHDWASVLSLGEQQXXXXXXXXXXKPTLVLLDESTSALDDM 705
+LE KLGYI R G D+ W V S GE+Q +P +DE TSA+
Sbjct: 641 ILEEAKLGYIPDREGGWDTKKVWKDVFSGGEKQRMGIARLLYHEPRYAFVDEGTSAVSSD 700
Query: 706 NERHLYSQIEAAGITYISIGHRKTLHKFHNKVLYISNSDSTDSNPRNWYLKPTEQMSIEE 765
E LY + +A GIT I+I R +L ++H+ L + + +D +E+ S+E+
Sbjct: 701 VEGLLYERCKAKGITLITISTRASLKRYHDYTLTLGLGEHSDEWEFQRIGTESEKSSVEK 760
>Os01g0966100 Similar to Peroxisomal ABC transporter
Length = 310
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 144/341 (42%), Gaps = 77/341 (22%)
Query: 395 VINQSVSAFNHILSDFSLIVFQFQSISAFSAVIDRLGEFDDLLDGNGSSLSKPDNIDGIN 454
V++QS AF IL + S I+R+ E ++LL + S+ + P N
Sbjct: 28 VVSQSFIAFGDILE-------LHKKFLELSGGINRVFELEELLQTSQSNAAMPSN----- 75
Query: 455 IIFKSTGPTVLSSNGSPTQSNPSMVLEICNLTLLTPRSGNILITDLTMELKEKDHLLVMG 514
P + ++ ++ ++TP S +L T L+ ++ + LLV G
Sbjct: 76 ----------------PIIAASEEIISFHDVDIVTP-SQKLLATQLSCDVSQGKSLLVTG 118
Query: 515 PSGSGKTSLLRALAGLWTSGTGDIIYHVRGSMELQTSNSGPDEPSNIQSNGEELLQSSKQ 574
P+GSGK+S+ R L GLW +G + PS+
Sbjct: 119 PNGSGKSSIFRVLRGLWPIASGRLTM-----------------PSD-------------- 147
Query: 575 RRDNGIFFVPQRPYMVLGTLRQQLLYPTWTEDVCHSSNNDPQSTDPLTFEVSTSDGVGSK 634
GIF VPQRPY LGTLR Q++YP E+ L+ S + S
Sbjct: 148 ----GIFHVPQRPYTCLGTLRDQIIYPLSHEEA---------ELKVLSLYKSGDKAITSG 194
Query: 635 SEMPTTDELIRVLEAVKLGYILPRFNGLDSMHDWASVLSLGEQQXXXXXXXXXXKPTLVL 694
S D L +LE V+L Y+L R G D+ +W +LSLGEQQ P +
Sbjct: 195 S---LDDHLKTILENVRLVYLLER-EGWDATPNWEDILSLGEQQRLGMARLFFHCPKFGI 250
Query: 695 LDESTSALDDMNERHLYSQIEAAGITYISIGHRKTLHKFHN 735
LDE T+A E HLY + GIT I+ R L FH+
Sbjct: 251 LDECTNATSVDVEEHLYKIATSMGITVITSSQRPALIPFHS 291
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,498,320
Number of extensions: 860675
Number of successful extensions: 2613
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2600
Number of HSP's successfully gapped: 7
Length of query: 771
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 662
Effective length of database: 11,344,475
Effective search space: 7510042450
Effective search space used: 7510042450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)